Variant report

Variant	rs7930662
Chromosome Location	chr11:83607427-83607428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10501550	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10898179	1.00[CEU][hapmap]
rs10898180	1.00[CEU][hapmap]
rs11233772	0.93[EUR][1000 genomes]
rs11233784	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233786	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233801	1.00[CEU][hapmap]
rs11233812	1.00[CEU][hapmap]
rs11518747	0.96[EUR][1000 genomes]
rs11826675	0.96[EUR][1000 genomes]
rs12362149	1.00[CEU][hapmap]
rs12363647	1.00[CEU][hapmap]
rs12364727	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12800483	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1483391	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1878263	0.83[EUR][1000 genomes]
rs5025916	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs56112908	0.96[EUR][1000 genomes]
rs790352	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83606200-83608800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:83606400-83608400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:83606600-83607600	Enhancers	Brain Anterior Caudate	brain
4	chr11:83606600-83607800	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:83606800-83608400	Enhancers	Brain Substantia Nigra	brain
6	chr11:83607000-83608000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:83607000-83611400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:83607200-83608400	Enhancers	Brain Hippocampus Middle	brain
9	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain
10	chr11:83607400-83607800	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links