Variant report

Variant	rs11233903
Chromosome Location	chr11:83799865-83799866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10501554	0.81[GIH][hapmap]
rs10501556	0.81[GIH][hapmap]
rs11233914	0.81[GIH][hapmap]
rs17563429	0.81[GIH][hapmap]
rs1945829	0.81[GIH][hapmap]
rs7106126	0.81[GIH][hapmap]
rs7946613	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83796000-83800000	Weak transcription	Fetal Brain Male	brain
2	chr11:83798600-83800400	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:83799200-83801400	Enhancers	Brain Germinal Matrix	brain
4	chr11:83799600-83801000	Enhancers	Fetal Lung	lung
5	chr11:83799600-83803800	Enhancers	Brain Hippocampus Middle	brain
6	chr11:83799800-83800800	Enhancers	Brain Anterior Caudate	brain
7	chr11:83799800-83800800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:83799800-83801200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:83799800-83801400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:83799800-83801400	Enhancers	Brain Angular Gyrus	brain
11	chr11:83799800-83802400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:83799800-83803400	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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