Variant report

Variant	rs7106126
Chromosome Location	chr11:83825694-83825695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10501554	0.82[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs10501556	0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs10898221	0.82[CEU][hapmap]
rs11233903	0.81[GIH][hapmap]
rs11233909	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11233910	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11233914	0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs11233916	0.82[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11233921	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs11233925	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11233926	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11233928	0.86[EUR][1000 genomes]
rs11233929	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11233938	0.86[EUR][1000 genomes]
rs11233966	0.82[CEU][hapmap]
rs12360734	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs12365077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17563401	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17563429	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs1945829	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58773272	0.92[EUR][1000 genomes]
rs59144272	1.00[EUR][1000 genomes]
rs60034832	0.92[EUR][1000 genomes]
rs60761480	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7125922	0.87[EUR][1000 genomes]
rs73515766	0.87[EUR][1000 genomes]
rs73515768	0.87[EUR][1000 genomes]
rs7927940	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs7946613	0.84[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2751034	chr11:83801970-83840272	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv555609	chr11:83822181-83842498	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7106126	MMP20	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83816600-83829200	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links