Variant report

Variant	rs11233926
Chromosome Location	chr11:83855403-83855404
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83853767..83856033-chr11:83857027..83859961,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10501554	0.82[CEU][hapmap];1.00[EUR][1000 genomes]
rs10501556	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs10898221	0.82[CEU][hapmap]
rs11233909	0.95[EUR][1000 genomes]
rs11233910	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11233914	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs11233916	0.82[CEU][hapmap];1.00[EUR][1000 genomes]
rs11233921	0.82[CEU][hapmap];1.00[EUR][1000 genomes]
rs11233925	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11233928	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11233929	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11233934	0.87[EUR][1000 genomes]
rs11233938	0.95[EUR][1000 genomes]
rs11233966	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs12360734	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12365077	0.92[EUR][1000 genomes]
rs17563401	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17563429	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1945829	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs58773272	0.90[EUR][1000 genomes]
rs59144272	0.92[EUR][1000 genomes]
rs60034832	0.90[EUR][1000 genomes]
rs60761480	0.92[EUR][1000 genomes]
rs7106126	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7125922	0.95[EUR][1000 genomes]
rs73515766	0.95[EUR][1000 genomes]
rs73515768	0.95[EUR][1000 genomes]
rs7927940	0.82[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3463509	chr11:83850358-83856029	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3463520	chr11:83850404-83856006	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3463497	chr11:83850425-83855976	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3463531	chr11:83850495-83855894	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83846600-83858200	Enhancers	Brain Hippocampus Middle	brain
2	chr11:83849400-83856400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:83851600-83856000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:83851800-83855800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:83851800-83856800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:83853600-83857000	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:83853600-83858200	Enhancers	Brain Substantia Nigra	brain
8	chr11:83854000-83857000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:83854800-83855600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:83854800-83858400	Enhancers	Brain Anterior Caudate	brain
11	chr11:83855200-83855600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:83855200-83855800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:83855200-83857800	Enhancers	Brain Angular Gyrus	brain
14	chr11:83855400-83855600	Enhancers	Placenta	Placenta
15	chr11:83855400-83858400	Enhancers	Brain Inferior Temporal Lobe	brain

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