Variant report

Variant	rs11233925
Chromosome Location	chr11:83849101-83849102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10501554	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10501556	0.92[EUR][1000 genomes]
rs10898221	1.00[CEU][hapmap]
rs11233880	1.00[CEU][hapmap]
rs11233909	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11233910	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11233914	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11233916	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233921	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233926	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11233928	0.95[EUR][1000 genomes]
rs11233929	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11233934	0.87[EUR][1000 genomes]
rs11233938	0.95[EUR][1000 genomes]
rs11233966	0.81[EUR][1000 genomes]
rs12360734	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12365077	0.92[EUR][1000 genomes]
rs12365137	1.00[CEU][hapmap]
rs17563401	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17563429	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1945829	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs57803795	0.95[AFR][1000 genomes]
rs58773272	0.90[EUR][1000 genomes]
rs59144272	0.92[EUR][1000 genomes]
rs60034832	0.90[EUR][1000 genomes]
rs60761480	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7106126	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7125922	0.95[EUR][1000 genomes]
rs73515766	0.95[EUR][1000 genomes]
rs73515768	0.95[EUR][1000 genomes]
rs7927940	1.00[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83846600-83849600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:83846600-83858200	Enhancers	Brain Hippocampus Middle	brain
3	chr11:83847600-83849600	Enhancers	Brain Angular Gyrus	brain
4	chr11:83847600-83850200	Enhancers	Brain Substantia Nigra	brain
5	chr11:83847800-83849200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr11:83847800-83849600	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:83848000-83849400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:83848400-83849400	Enhancers	Brain Anterior Caudate	brain
9	chr11:83849000-83850400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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