Variant report

Variant	rs11233929
Chromosome Location	chr11:83866720-83866721
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10501554	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs10501556	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs10898221	0.82[CEU][hapmap]
rs11233909	0.87[EUR][1000 genomes]
rs11233910	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11233914	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11233916	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs11233921	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs11233925	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11233926	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11233928	0.87[EUR][1000 genomes]
rs11233934	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11233938	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11233966	0.82[CEU][hapmap];1.00[AFR][1000 genomes]
rs12360734	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12365077	0.84[EUR][1000 genomes]
rs17563401	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17563429	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1945829	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs58773272	0.82[EUR][1000 genomes]
rs59144272	0.84[EUR][1000 genomes]
rs60034832	0.82[EUR][1000 genomes]
rs60761480	0.84[EUR][1000 genomes]
rs7106126	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7125922	0.87[EUR][1000 genomes]
rs73515766	0.87[EUR][1000 genomes]
rs73515768	0.87[EUR][1000 genomes]
rs7927940	0.82[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83858400-83867200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83866400-83867000	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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