Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10501554	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs10501556	0.82[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10898221	0.82[CEU][hapmap]
rs11233909	0.84[EUR][1000 genomes]
rs11233910	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11233914	0.82[CEU][hapmap];0.91[YRI][hapmap];0.85[EUR][1000 genomes]
rs11233916	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs11233921	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs11233925	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11233926	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11233928	0.84[EUR][1000 genomes]
rs11233929	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11233934	0.83[EUR][1000 genomes]
rs11233938	0.90[EUR][1000 genomes]
rs11233966	0.82[CEU][hapmap]
rs12360734	1.00[CEU][hapmap]
rs12365077	0.82[EUR][1000 genomes]
rs17563429	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1945829	1.00[CEU][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes]
rs58773272	0.85[EUR][1000 genomes]
rs59144272	0.82[EUR][1000 genomes]
rs60034832	0.85[EUR][1000 genomes]
rs60761480	0.82[EUR][1000 genomes]
rs7106126	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7125922	0.95[EUR][1000 genomes]
rs73515766	0.90[EUR][1000 genomes]
rs73515768	0.90[EUR][1000 genomes]
rs7927940	0.82[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83868800-83884200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83875800-83877200	Enhancers	Brain Hippocampus Middle	brain
3	chr11:83875800-83884200	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83877000-83877200	Enhancers	Brain Angular Gyrus	brain

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