Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10501554	0.95[EUR][1000 genomes]
rs10501556	0.87[EUR][1000 genomes]
rs11233909	0.89[EUR][1000 genomes]
rs11233910	0.89[EUR][1000 genomes]
rs11233914	0.84[EUR][1000 genomes]
rs11233916	0.95[EUR][1000 genomes]
rs11233921	0.95[EUR][1000 genomes]
rs11233925	0.95[EUR][1000 genomes]
rs11233926	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11233929	0.87[EUR][1000 genomes]
rs11233934	0.82[EUR][1000 genomes]
rs11233938	0.89[EUR][1000 genomes]
rs12365077	0.86[EUR][1000 genomes]
rs17563401	0.84[EUR][1000 genomes]
rs17563429	0.90[EUR][1000 genomes]
rs1945829	0.89[EUR][1000 genomes]
rs58773272	0.84[EUR][1000 genomes]
rs59144272	0.86[EUR][1000 genomes]
rs60034832	0.84[EUR][1000 genomes]
rs60761480	0.87[EUR][1000 genomes]
rs7106126	0.86[EUR][1000 genomes]
rs7125922	0.90[EUR][1000 genomes]
rs73515766	0.90[EUR][1000 genomes]
rs73515768	0.90[EUR][1000 genomes]
rs7927940	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83846600-83858200	Enhancers	Brain Hippocampus Middle	brain
2	chr11:83849400-83856400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:83851800-83856800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:83853600-83857000	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:83853600-83858200	Enhancers	Brain Substantia Nigra	brain
6	chr11:83854000-83857000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:83854800-83858400	Enhancers	Brain Anterior Caudate	brain
8	chr11:83855200-83857800	Enhancers	Brain Angular Gyrus	brain
9	chr11:83855400-83858400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr11:83855600-83857000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:83855800-83856400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:83856000-83856600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr11:83856000-83857200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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