Variant report

Variant	rs57803795
Chromosome Location	chr11:83875179-83875180
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10501554	0.95[AFR][1000 genomes]
rs11233909	0.81[AFR][1000 genomes]
rs11233910	0.85[AFR][1000 genomes]
rs11233921	0.83[AFR][1000 genomes]
rs11233925	0.95[AFR][1000 genomes]
rs1945829	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83868800-83884200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83869000-83875800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:83872600-83875400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:83873800-83876400	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:83874000-83875600	Enhancers	Brain Angular Gyrus	brain
6	chr11:83874400-83875800	Enhancers	Brain Substantia Nigra	brain
7	chr11:83874400-83876000	Weak transcription	Brain Germinal Matrix	brain
8	chr11:83874600-83875600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr11:83874800-83875800	Weak transcription	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links