Variant report

Variant	rs11234415
Chromosome Location	chr11:85513235-85513236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10501597	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10898409	0.95[ASN][1000 genomes]
rs11234386	0.97[EUR][1000 genomes]
rs11234387	0.97[EUR][1000 genomes]
rs11234388	0.97[EUR][1000 genomes]
rs11234390	0.97[EUR][1000 genomes]
rs11234391	0.90[EUR][1000 genomes]
rs11234392	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11234393	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11234395	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11234397	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11234404	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11234408	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11234409	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11234413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11234416	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11234418	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12286030	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12286043	0.83[ASN][1000 genomes]
rs12286206	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12365370	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17148355	0.97[EUR][1000 genomes]
rs17811120	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2044393	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2276018	0.97[EUR][1000 genomes]
rs2304343	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3891432	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73518846	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv832222	chr11:85405712-85603981	Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1047147	chr11:85459235-85594800	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv541114	chr11:85459235-85594800	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	esv2762927	chr11:85468051-85559618	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1052737	chr11:85477084-85554914	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv541115	chr11:85477084-85554914	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1049630	chr11:85486866-85535123	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85491800-85517800	Weak transcription	NHLF	lung
2	chr11:85499200-85517200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr11:85499800-85517400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:85503400-85516400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:85506200-85514400	Weak transcription	Primary T cells from cord blood	blood
6	chr11:85509800-85520000	Weak transcription	HSMM	muscle
7	chr11:85510000-85518000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr11:85510800-85516600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:85510800-85520200	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:85511800-85517600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr11:85512000-85514000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:85512000-85518000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:85512000-85520000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:85512200-85514400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:85512200-85517800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:85512200-85518000	Weak transcription	Small Intestine	intestine
17	chr11:85512400-85513400	Weak transcription	Stomach Mucosa	stomach
18	chr11:85512400-85517800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:85512800-85518000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr11:85513000-85514600	Enhancers	Gastric	stomach
21	chr11:85513200-85514000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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