Variant report

Variant	rs11234408
Chromosome Location	chr11:85496242-85496243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85495095..85500419-chr11:85536956..85541120,6	MCF-7	breast:
2	chr11:85494490..85496333-chr11:85515737..85519342,3	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1043858	1.00[CEU][hapmap]
rs10501597	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898409	0.97[ASN][1000 genomes]
rs11234386	1.00[EUR][1000 genomes]
rs11234387	1.00[EUR][1000 genomes]
rs11234388	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs11234389	0.85[JPT][hapmap]
rs11234390	1.00[EUR][1000 genomes]
rs11234391	0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs11234392	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11234393	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11234395	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11234397	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11234404	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11234409	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11234413	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11234415	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11234416	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11234418	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12286030	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12286206	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12365370	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17148355	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs17208616	0.85[JPT][hapmap]
rs17209127	1.00[CEU][hapmap]
rs17810855	0.92[JPT][hapmap]
rs17811120	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2044393	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2276018	0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs2304343	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3891432	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs616309	0.84[JPT][hapmap]
rs645798	0.85[JPT][hapmap]
rs73518846	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv832222	chr11:85405712-85603981	Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv898050	chr11:85406915-85499290	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1047147	chr11:85459235-85594800	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv541114	chr11:85459235-85594800	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	esv2762927	chr11:85468051-85559618	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv1052737	chr11:85477084-85554914	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv541115	chr11:85477084-85554914	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv1049630	chr11:85486866-85535123	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv528829	chr11:85495269-85496292	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85491000-85499600	Enhancers	Stomach Mucosa	stomach
2	chr11:85491600-85499000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:85491800-85517800	Weak transcription	NHLF	lung
4	chr11:85492000-85498000	Weak transcription	Colonic Mucosa	Colon
5	chr11:85492200-85502800	Weak transcription	Small Intestine	intestine
6	chr11:85492800-85498400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:85493000-85497800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:85493000-85498400	Weak transcription	Primary T cells from cord blood	blood
9	chr11:85493000-85498800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:85493000-85499000	Weak transcription	NHDF-Ad	bronchial
11	chr11:85493000-85499400	Weak transcription	HMEC	breast
12	chr11:85493400-85498800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:85493400-85499200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:85493400-85501200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:85493400-85502400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:85494000-85497600	Weak transcription	Fetal Intestine Small	intestine
17	chr11:85494000-85498600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:85494000-85502400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:85494600-85496400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:85495200-85497200	Weak transcription	Fetal Intestine Large	intestine
21	chr11:85496000-85496400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr11:85496000-85496400	Enhancers	NHEK	skin
23	chr11:85496000-85498200	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr11:85496200-85496400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:85496200-85496600	Weak transcription	A549	lung
26	chr11:85496200-85498600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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