Variant report

Variant	rs616309
Chromosome Location	chr11:85311011-85311012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85309950..85311806-chr11:85311886..85314755,2	K562	blood:
2	chr11:85310164..85311920-chr11:85338009..85339914,2	K562	blood:
3	chr11:85310148..85311730-chr11:85375856..85377396,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171204	Chromatin interaction
ENSG00000150672	Chromatin interaction
ENSG00000137504	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11234386	0.84[ASN][1000 genomes]
rs11234387	0.84[ASN][1000 genomes]
rs11234388	1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11234389	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs11234390	0.85[ASN][1000 genomes]
rs11234391	1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs11234393	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11234397	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs11827749	0.82[CHB][hapmap]
rs17148355	1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs17208525	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs17208602	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs17208616	1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs17810701	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs17810766	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs17810802	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs17810855	1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs17811120	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs2276018	1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs2304342	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs2304343	0.92[JPT][hapmap]
rs2374638	0.94[ASN][1000 genomes]
rs494119	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56695336	0.94[ASN][1000 genomes]
rs57431471	1.00[ASN][1000 genomes]
rs58631677	0.93[ASN][1000 genomes]
rs59508078	0.94[ASN][1000 genomes]
rs645798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647987	0.83[CEU][hapmap]
rs678376	0.85[CHB][hapmap]
rs72953916	0.81[ASN][1000 genomes]
rs72953921	0.81[ASN][1000 genomes]
rs72953926	0.81[ASN][1000 genomes]
rs72953932	0.81[ASN][1000 genomes]
rs72953934	0.81[ASN][1000 genomes]
rs72953938	0.81[ASN][1000 genomes]
rs72953967	0.90[ASN][1000 genomes]
rs72953982	0.94[ASN][1000 genomes]
rs72953991	0.94[ASN][1000 genomes]
rs72953995	1.00[ASN][1000 genomes]
rs72955904	1.00[ASN][1000 genomes]
rs72955912	0.83[ASN][1000 genomes]
rs72955918	0.83[ASN][1000 genomes]
rs72955922	0.94[ASN][1000 genomes]
rs72955939	0.83[ASN][1000 genomes]
rs72958012	0.94[ASN][1000 genomes]
rs72958014	0.94[ASN][1000 genomes]
rs72958027	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85310200-85311400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr11:85310600-85311400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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