Variant report

Variant	rs11827749
Chromosome Location	chr11:85169948-85169949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85169801..85172207-chr11:85373723..85376174,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137504	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1000799	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10501592	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs11821513	0.89[EUR][1000 genomes]
rs11822362	0.89[EUR][1000 genomes]
rs11823978	0.88[EUR][1000 genomes]
rs11825901	0.88[EUR][1000 genomes]
rs11827372	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs12788992	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1509812	0.87[ASN][1000 genomes]
rs17148078	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs17148086	0.86[EUR][1000 genomes]
rs17208525	0.82[CHB][hapmap]
rs17810611	0.84[ASN][1000 genomes]
rs17810701	0.82[CHB][hapmap]
rs1812352	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876872	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1912266	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1914371	0.81[JPT][hapmap]
rs2036782	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2304342	0.82[CHB][hapmap]
rs494119	0.82[CHB][hapmap]
rs57494426	0.91[ASN][1000 genomes]
rs58117031	0.84[ASN][1000 genomes]
rs58649506	0.87[ASN][1000 genomes]
rs59015145	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59464672	0.84[ASN][1000 genomes]
rs59583891	0.88[EUR][1000 genomes]
rs59713586	0.84[ASN][1000 genomes]
rs616309	0.82[CHB][hapmap]
rs645798	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs6592235	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6592236	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7117010	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72951920	0.84[ASN][1000 genomes]
rs72951948	0.80[ASN][1000 genomes]
rs72951958	0.91[ASN][1000 genomes]
rs72951961	0.91[ASN][1000 genomes]
rs72951976	0.84[ASN][1000 genomes]
rs72951982	0.87[ASN][1000 genomes]
rs72951984	0.87[ASN][1000 genomes]
rs72951987	0.94[ASN][1000 genomes]
rs72951995	0.94[ASN][1000 genomes]
rs72952002	0.94[ASN][1000 genomes]
rs72953904	0.94[ASN][1000 genomes]
rs72953907	0.94[ASN][1000 genomes]
rs72953908	0.94[ASN][1000 genomes]
rs72953916	0.80[ASN][1000 genomes]
rs72953921	0.80[ASN][1000 genomes]
rs72953925	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72953926	0.80[ASN][1000 genomes]
rs72953932	0.80[ASN][1000 genomes]
rs72953934	0.80[ASN][1000 genomes]
rs72953938	0.80[ASN][1000 genomes]
rs7938874	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7940610	0.89[EUR][1000 genomes]
rs7951307	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv1035905	chr11:85130543-85220773	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1050363	chr11:85163437-85293233	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv541111	chr11:85163437-85293233	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85163600-85173800	Weak transcription	Left Ventricle	heart

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