Variant report

Variant	rs17148078
Chromosome Location	chr11:84977927-84977928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 152 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs10501589	1.00[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10501592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821513	0.93[ASN][1000 genomes]
rs11822362	0.93[ASN][1000 genomes]
rs11823560	0.92[JPT][hapmap]
rs11823732	0.93[ASW][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11823978	0.95[ASN][1000 genomes]
rs11825901	0.95[ASN][1000 genomes]
rs11827372	0.93[ASW][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11827749	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs12281150	0.94[CHD][hapmap];0.86[JPT][hapmap]
rs12788992	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509812	0.81[EUR][1000 genomes]
rs1602992	0.89[CHD][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs17148016	1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17148028	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs17148044	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17148047	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs17148049	0.89[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17148061	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17148063	1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148067	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148070	1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148086	0.95[ASN][1000 genomes]
rs17148090	1.00[ASN][1000 genomes]
rs17159864	0.96[ASN][1000 genomes]
rs17207605	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs17207843	1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17207864	1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208108	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208150	1.00[CEU][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17208171	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208192	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810172	0.94[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.83[TSI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17810280	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs17810291	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17810357	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810405	1.00[CEU][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810429	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810490	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17810611	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1914371	1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1914372	1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2032410	0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2036782	0.82[ASN][1000 genomes]
rs2056182	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2088015	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2088016	0.87[ASN][1000 genomes]
rs2088017	0.89[CHD][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs2213116	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3941173	0.87[ASN][1000 genomes]
rs56306275	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57104960	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57494426	0.81[EUR][1000 genomes]
rs57671189	0.87[ASN][1000 genomes]
rs58028528	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58117031	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58464081	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58515356	0.86[ASN][1000 genomes]
rs58649506	0.81[EUR][1000 genomes]
rs58756447	0.93[ASN][1000 genomes]
rs59464672	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59583891	0.95[ASN][1000 genomes]
rs59713586	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59851854	0.87[ASN][1000 genomes]
rs59869002	0.98[ASN][1000 genomes]
rs60030322	0.87[ASN][1000 genomes]
rs60284674	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60360244	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60383907	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61368496	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61697848	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6592236	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7108893	1.00[JPT][hapmap]
rs7110155	0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs7112335	0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7117010	0.82[ASN][1000 genomes]
rs7129666	0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs72945906	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72945910	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72945914	0.87[ASN][1000 genomes]
rs72945917	0.87[ASN][1000 genomes]
rs72945919	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72945920	0.87[ASN][1000 genomes]
rs72945921	0.87[ASN][1000 genomes]
rs72945944	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72945948	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72945956	0.93[ASN][1000 genomes]
rs72945965	0.93[ASN][1000 genomes]
rs72947961	0.93[ASN][1000 genomes]
rs72947963	0.93[ASN][1000 genomes]
rs72947971	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947974	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947975	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947981	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947999	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72950104	0.93[ASN][1000 genomes]
rs72950107	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950109	0.95[ASN][1000 genomes]
rs72950128	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950129	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950131	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950137	0.95[ASN][1000 genomes]
rs72950141	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72950152	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950153	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950156	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950157	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950158	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950161	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950165	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950167	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950168	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950169	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950175	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950176	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950181	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950182	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950186	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72951917	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72951920	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72951948	0.84[ASN][1000 genomes]
rs72951958	0.81[EUR][1000 genomes]
rs72951961	0.85[EUR][1000 genomes]
rs72951976	0.81[EUR][1000 genomes]
rs72951982	0.81[EUR][1000 genomes]
rs72951984	0.81[EUR][1000 genomes]
rs72951987	0.81[EUR][1000 genomes]
rs72952002	0.81[EUR][1000 genomes]
rs72953904	0.81[EUR][1000 genomes]
rs72953907	0.81[EUR][1000 genomes]
rs72953908	0.81[EUR][1000 genomes]
rs72961528	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961539	0.91[ASN][1000 genomes]
rs72961540	0.92[ASN][1000 genomes]
rs72961550	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961552	0.87[ASN][1000 genomes]
rs72961553	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961554	0.91[ASN][1000 genomes]
rs72961555	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961557	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961558	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961562	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961567	0.87[ASN][1000 genomes]
rs72961570	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7924587	0.95[ASN][1000 genomes]
rs7940610	0.89[ASN][1000 genomes]
rs7947098	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84967800-85019400	Weak transcription	Ovary	ovary
2	chr11:84972800-84980200	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:84974800-84978600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:84974800-84998400	Weak transcription	HSMMtube	muscle
5	chr11:84975200-84982200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:84976600-84978600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:84977000-84978200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr11:84977000-84978400	Enhancers	Primary neutrophils fromperipheralblood	blood

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