Variant report

Variant	rs6592235
Chromosome Location	chr11:84979877-84979878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84901061..84901796-chr11:84979824..84980788,2	MCF-7	breast:

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs1000799	0.81[ASN][1000 genomes]
rs10501589	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10501592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11821513	0.98[ASN][1000 genomes]
rs11822362	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11823560	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs11823732	1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11823978	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11825901	1.00[ASN][1000 genomes]
rs11827372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827749	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs12281150	0.82[CEU][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12788992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1602992	1.00[CEU][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17148016	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17148028	0.82[CEU][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17148044	1.00[JPT][hapmap]
rs17148047	1.00[JPT][hapmap]
rs17148049	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148061	1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148063	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17148067	1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17148070	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17148078	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17148086	1.00[ASN][1000 genomes]
rs17148090	0.95[ASN][1000 genomes]
rs17159864	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17207605	0.85[JPT][hapmap]
rs17207843	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17207864	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17208108	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17208150	0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs17208171	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17208192	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17810172	0.93[JPT][hapmap]
rs17810280	0.92[JPT][hapmap]
rs17810291	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810357	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17810405	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17810429	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17810490	0.95[ASN][1000 genomes]
rs17810611	0.82[ASN][1000 genomes]
rs1914371	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1914372	1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2032410	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2036782	0.87[ASN][1000 genomes]
rs2056182	1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2088015	0.91[ASN][1000 genomes]
rs2088016	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2088017	1.00[CEU][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2213116	0.93[ASN][1000 genomes]
rs3941173	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56306275	0.89[ASN][1000 genomes]
rs57104960	0.93[ASN][1000 genomes]
rs57671189	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58028528	0.91[ASN][1000 genomes]
rs58117031	0.82[ASN][1000 genomes]
rs58464081	0.95[ASN][1000 genomes]
rs58515356	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58756447	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59464672	0.82[ASN][1000 genomes]
rs59583891	1.00[ASN][1000 genomes]
rs59713586	0.82[ASN][1000 genomes]
rs59851854	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59869002	0.93[ASN][1000 genomes]
rs60030322	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60360244	0.93[ASN][1000 genomes]
rs60383907	0.91[ASN][1000 genomes]
rs61368496	0.91[ASN][1000 genomes]
rs61697848	0.91[ASN][1000 genomes]
rs6592236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108893	1.00[JPT][hapmap]
rs7110155	0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7112335	1.00[JPT][hapmap]
rs7117010	0.87[ASN][1000 genomes]
rs7129666	1.00[JPT][hapmap]
rs72945906	0.91[ASN][1000 genomes]
rs72945910	0.91[ASN][1000 genomes]
rs72945914	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72945917	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72945919	0.91[ASN][1000 genomes]
rs72945920	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72945921	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72945944	0.93[ASN][1000 genomes]
rs72945948	0.93[ASN][1000 genomes]
rs72945956	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72945965	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947961	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947963	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947971	0.93[ASN][1000 genomes]
rs72947974	0.93[ASN][1000 genomes]
rs72947975	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs72947981	0.93[ASN][1000 genomes]
rs72947999	0.93[ASN][1000 genomes]
rs72950104	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72950107	0.95[ASN][1000 genomes]
rs72950109	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950128	0.95[ASN][1000 genomes]
rs72950129	0.95[ASN][1000 genomes]
rs72950131	0.95[ASN][1000 genomes]
rs72950137	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950141	0.93[ASN][1000 genomes]
rs72950152	0.95[ASN][1000 genomes]
rs72950153	0.95[ASN][1000 genomes]
rs72950156	0.95[ASN][1000 genomes]
rs72950157	0.95[ASN][1000 genomes]
rs72950158	0.95[ASN][1000 genomes]
rs72950161	0.95[ASN][1000 genomes]
rs72950165	0.95[ASN][1000 genomes]
rs72950167	0.95[ASN][1000 genomes]
rs72950168	0.95[ASN][1000 genomes]
rs72950169	0.95[ASN][1000 genomes]
rs72950175	0.95[ASN][1000 genomes]
rs72950176	0.95[ASN][1000 genomes]
rs72950181	0.95[ASN][1000 genomes]
rs72950182	0.95[ASN][1000 genomes]
rs72950186	0.93[ASN][1000 genomes]
rs72951917	0.93[ASN][1000 genomes]
rs72951920	0.82[ASN][1000 genomes]
rs72961528	0.91[ASN][1000 genomes]
rs72961539	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961540	0.87[ASN][1000 genomes]
rs72961550	0.91[ASN][1000 genomes]
rs72961552	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72961553	0.91[ASN][1000 genomes]
rs72961554	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961555	0.91[ASN][1000 genomes]
rs72961557	0.91[ASN][1000 genomes]
rs72961558	0.91[ASN][1000 genomes]
rs72961562	0.91[ASN][1000 genomes]
rs72961567	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72961570	0.91[ASN][1000 genomes]
rs7924587	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940610	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7947098	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84967800-85019400	Weak transcription	Ovary	ovary
2	chr11:84972800-84980200	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:84974800-84998400	Weak transcription	HSMMtube	muscle
4	chr11:84975200-84982200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:84979000-84980800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:84979200-84980400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:84979400-84980600	Enhancers	Monocytes-CD14+_RO01746	blood

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