Variant report

Variant	rs17207605
Chromosome Location	chr11:84799666-84799667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84793270..84795600-chr11:84797702..84799867,2	MCF-7	breast:
2	chr11:84789796..84792505-chr11:84797965..84799859,2	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10501589	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs10501592	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs11823560	1.00[CHB][hapmap]
rs11823732	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs11827372	0.85[JPT][hapmap]
rs12788992	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs1602992	1.00[CHB][hapmap]
rs17148016	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs17148028	1.00[CHB][hapmap]
rs17148044	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17148047	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17148049	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17148061	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17148063	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs17148067	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs17148070	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs17148078	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs17159864	0.81[ASN][1000 genomes]
rs17207843	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs17207864	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs17208108	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs17208150	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs17208171	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs17208192	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs17809597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17809753	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17810172	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17810291	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17810357	1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs17810405	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs17810429	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1914371	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1914372	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs2032410	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2056182	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2088015	0.85[ASN][1000 genomes]
rs2088017	1.00[CHB][hapmap]
rs2105635	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs56306275	0.83[ASN][1000 genomes]
rs58028528	0.85[ASN][1000 genomes]
rs58464081	0.81[ASN][1000 genomes]
rs60360244	0.83[ASN][1000 genomes]
rs60383907	0.85[ASN][1000 genomes]
rs61368496	0.85[ASN][1000 genomes]
rs6592235	0.85[JPT][hapmap]
rs6592236	0.85[JPT][hapmap]
rs7108893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7110155	1.00[CHB][hapmap]
rs7112335	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7129666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs72945906	0.85[ASN][1000 genomes]
rs72945910	0.85[ASN][1000 genomes]
rs72945919	0.85[ASN][1000 genomes]
rs72945944	0.83[ASN][1000 genomes]
rs72945948	0.83[ASN][1000 genomes]
rs72947971	0.83[ASN][1000 genomes]
rs72947974	0.83[ASN][1000 genomes]
rs72947975	0.83[ASN][1000 genomes]
rs72947981	0.83[ASN][1000 genomes]
rs72947999	0.83[ASN][1000 genomes]
rs72950107	0.81[ASN][1000 genomes]
rs72950128	0.81[ASN][1000 genomes]
rs72950129	0.81[ASN][1000 genomes]
rs72950131	0.81[ASN][1000 genomes]
rs72950152	0.81[ASN][1000 genomes]
rs72950153	0.81[ASN][1000 genomes]
rs72950156	0.81[ASN][1000 genomes]
rs72950157	0.81[ASN][1000 genomes]
rs72950158	0.81[ASN][1000 genomes]
rs72950161	0.81[ASN][1000 genomes]
rs72957781	0.81[EUR][1000 genomes]
rs72957799	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72959763	1.00[EUR][1000 genomes]
rs72961518	1.00[EUR][1000 genomes]
rs72961528	0.85[ASN][1000 genomes]
rs72961540	0.81[ASN][1000 genomes]
rs72961550	0.85[ASN][1000 genomes]
rs72961553	0.85[ASN][1000 genomes]
rs72961555	0.85[ASN][1000 genomes]
rs72961557	0.85[ASN][1000 genomes]
rs72961558	0.85[ASN][1000 genomes]
rs72961562	0.85[ASN][1000 genomes]
rs72961570	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84797600-84800200	Enhancers	NHLF	lung
2	chr11:84798600-84801400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:84799000-84801800	Weak transcription	NHEK	skin
4	chr11:84799600-84801400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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