Variant report

Variant	rs10501589
Chromosome Location	chr11:84847104-84847105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr11:84846959-84847266	HepG2	liver:	n/a	chr11:84847100-84847110 chr11:84847099-84847114 chr11:84847101-84847110 chr11:84847102-84847116
2	MAFK	chr11:84846959-84847245	IMR90	lung:	n/a	chr11:84847100-84847110 chr11:84847099-84847114 chr11:84847101-84847110 chr11:84847102-84847116
3	MAFK	chr11:84846967-84847167	HepG2	liver:	n/a	chr11:84847100-84847110 chr11:84847099-84847114 chr11:84847101-84847110 chr11:84847102-84847116
4	MAFF	chr11:84847075-84847138	K562	blood:	n/a	chr11:84847098-84847116
5	MAFF	chr11:84847007-84847233	HepG2	liver:	n/a	chr11:84847098-84847116

Variant related genes	Relation type
DLG2	TF binding region

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10501592	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11822362	0.93[ASN][1000 genomes]
rs11823560	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs11823732	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11823978	0.91[ASN][1000 genomes]
rs11825901	0.91[ASN][1000 genomes]
rs11827372	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12281150	0.94[CHD][hapmap];0.86[JPT][hapmap]
rs12788992	1.00[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1602992	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs17148016	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17148028	1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs17148044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17148047	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs17148049	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17148061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17148063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148078	1.00[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17148086	0.91[ASN][1000 genomes]
rs17148090	0.96[ASN][1000 genomes]
rs17159864	0.96[ASN][1000 genomes]
rs17207605	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs17207843	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17207864	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17208171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17809597	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17809753	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs17810172	1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17810280	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs17810291	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17810357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810490	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1914371	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1914372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2032410	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2056182	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2088015	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088016	0.91[ASN][1000 genomes]
rs2088017	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs2105635	1.00[CHB][hapmap]
rs2213116	0.98[ASN][1000 genomes]
rs3941173	0.91[ASN][1000 genomes]
rs56306275	0.94[ASN][1000 genomes]
rs57671189	0.91[ASN][1000 genomes]
rs58028528	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58464081	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58515356	0.89[ASN][1000 genomes]
rs58756447	0.93[ASN][1000 genomes]
rs59583891	0.91[ASN][1000 genomes]
rs59851854	0.91[ASN][1000 genomes]
rs59869002	0.98[ASN][1000 genomes]
rs60030322	0.91[ASN][1000 genomes]
rs60284674	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60360244	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60383907	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61368496	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61697848	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6592235	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6592236	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7108893	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7110155	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs7112335	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7129666	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs72945906	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945910	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945914	0.91[ASN][1000 genomes]
rs72945917	0.91[ASN][1000 genomes]
rs72945919	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72945920	0.91[ASN][1000 genomes]
rs72945921	0.91[ASN][1000 genomes]
rs72945944	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72945948	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72945956	0.93[ASN][1000 genomes]
rs72945965	0.93[ASN][1000 genomes]
rs72947961	0.93[ASN][1000 genomes]
rs72947963	0.93[ASN][1000 genomes]
rs72947971	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947974	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947975	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947981	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947999	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72950104	0.93[ASN][1000 genomes]
rs72950107	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950109	0.91[ASN][1000 genomes]
rs72950128	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950129	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950131	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950137	0.91[ASN][1000 genomes]
rs72950141	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72950152	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950153	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950156	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950157	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950158	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950161	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950165	0.96[ASN][1000 genomes]
rs72950167	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950168	0.96[ASN][1000 genomes]
rs72950169	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950175	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950176	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950181	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950182	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950186	0.98[ASN][1000 genomes]
rs72961528	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961539	0.94[ASN][1000 genomes]
rs72961540	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72961550	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961552	0.91[ASN][1000 genomes]
rs72961553	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961554	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72961555	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961557	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961558	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961562	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961567	0.91[ASN][1000 genomes]
rs72961570	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924587	0.91[ASN][1000 genomes]
rs7940610	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84844400-84848400	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:84844800-84848600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:84845000-84847200	Weak transcription	Fetal Brain Male	brain
4	chr11:84846600-84847400	Enhancers	Pancreatic Islets	Pancreatic Islet

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