Variant report

Variant	rs17208150
Chromosome Location	chr11:84966372-84966373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84965218..84967879-chr11:84970390..84972162,2	K562	blood:

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs10501589	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10501592	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11821513	0.89[ASN][1000 genomes]
rs11822362	0.89[ASN][1000 genomes]
rs11823560	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs11823732	1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[ASN][1000 genomes]
rs11823978	0.91[ASN][1000 genomes]
rs11825901	0.91[ASN][1000 genomes]
rs11827372	0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs12788992	1.00[CEU][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1509812	0.84[EUR][1000 genomes]
rs1602992	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs17148016	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17148028	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs17148044	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs17148047	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs17148049	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs17148061	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs17148063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148070	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148078	1.00[CEU][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17148086	0.91[ASN][1000 genomes]
rs17148090	0.96[ASN][1000 genomes]
rs17159864	0.96[ASN][1000 genomes]
rs17207605	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs17207843	1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17207864	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208192	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810172	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17810280	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs17810291	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs17810357	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810429	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810490	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17810611	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1914371	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs1914372	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2032410	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2056182	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs2088015	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2088016	0.87[ASN][1000 genomes]
rs2088017	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2213116	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3941173	0.87[ASN][1000 genomes]
rs56306275	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57104960	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57494426	0.84[EUR][1000 genomes]
rs57671189	0.87[ASN][1000 genomes]
rs58028528	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58117031	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58464081	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58515356	0.86[ASN][1000 genomes]
rs58649506	0.84[EUR][1000 genomes]
rs58756447	0.93[ASN][1000 genomes]
rs59464672	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59583891	0.91[ASN][1000 genomes]
rs59713586	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59851854	0.87[ASN][1000 genomes]
rs59869002	0.94[ASN][1000 genomes]
rs60030322	0.87[ASN][1000 genomes]
rs60284674	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60360244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60383907	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61368496	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61697848	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6592235	0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs6592236	0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7108893	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7110155	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs7112335	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7129666	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs72945906	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72945910	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72945914	0.87[ASN][1000 genomes]
rs72945917	0.87[ASN][1000 genomes]
rs72945919	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72945920	0.87[ASN][1000 genomes]
rs72945921	0.87[ASN][1000 genomes]
rs72945944	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72945948	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72945956	0.93[ASN][1000 genomes]
rs72945965	0.93[ASN][1000 genomes]
rs72947961	0.93[ASN][1000 genomes]
rs72947963	0.93[ASN][1000 genomes]
rs72947971	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947975	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947981	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947999	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72950104	0.93[ASN][1000 genomes]
rs72950107	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950109	0.91[ASN][1000 genomes]
rs72950128	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950129	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950131	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950137	0.91[ASN][1000 genomes]
rs72950141	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72950152	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950153	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950156	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950157	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950158	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950161	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950165	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950167	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950168	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950169	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950175	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950176	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950181	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950182	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950186	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72951917	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72951920	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72951948	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72951958	0.84[EUR][1000 genomes]
rs72951961	0.81[EUR][1000 genomes]
rs72951976	0.84[EUR][1000 genomes]
rs72951982	0.84[EUR][1000 genomes]
rs72951984	0.84[EUR][1000 genomes]
rs72951987	0.84[EUR][1000 genomes]
rs72961528	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961539	0.91[ASN][1000 genomes]
rs72961540	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72961550	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961552	0.87[ASN][1000 genomes]
rs72961553	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961554	0.91[ASN][1000 genomes]
rs72961555	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961557	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961558	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961562	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72961567	0.87[ASN][1000 genomes]
rs72961570	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7924587	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7940610	0.86[ASN][1000 genomes]
rs7947098	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84963800-84972800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:84964800-84971800	Weak transcription	HSMMtube	muscle
3	chr11:84965200-84974400	Weak transcription	Left Ventricle	heart
4	chr11:84965200-84977000	Weak transcription	Aorta	Aorta
5	chr11:84965400-84966800	Weak transcription	Ovary	ovary
6	chr11:84966000-84968400	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links