Variant report

Variant	rs59464672
Chromosome Location	chr11:85069054-85069055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs1000799	0.87[ASN][1000 genomes]
rs10501592	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11821513	0.84[ASN][1000 genomes]
rs11822362	0.84[ASN][1000 genomes]
rs11823732	0.85[ASN][1000 genomes]
rs11823978	0.82[ASN][1000 genomes]
rs11825901	0.82[ASN][1000 genomes]
rs11827372	0.82[ASN][1000 genomes]
rs11827749	0.84[ASN][1000 genomes]
rs12788992	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1509812	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17148049	0.80[ASN][1000 genomes]
rs17148061	0.80[ASN][1000 genomes]
rs17148063	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17148067	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17148070	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17148078	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17148086	0.82[ASN][1000 genomes]
rs17148090	0.87[ASN][1000 genomes]
rs17159864	0.83[ASN][1000 genomes]
rs17207843	0.87[ASN][1000 genomes]
rs17207864	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17208108	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17208150	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17208171	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17208192	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17810172	0.81[EUR][1000 genomes]
rs17810291	0.80[ASN][1000 genomes]
rs17810357	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17810405	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17810429	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17810490	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17810611	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1812352	0.84[ASN][1000 genomes]
rs1914371	0.80[ASN][1000 genomes]
rs1914372	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2032410	0.80[ASN][1000 genomes]
rs2036782	0.94[ASN][1000 genomes]
rs2056182	0.80[ASN][1000 genomes]
rs2088015	0.87[ASN][1000 genomes]
rs2213116	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56306275	0.81[ASN][1000 genomes]
rs57104960	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57494426	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58028528	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58117031	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58464081	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58649506	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58756447	0.80[ASN][1000 genomes]
rs59015145	0.82[ASN][1000 genomes]
rs59583891	0.82[ASN][1000 genomes]
rs59713586	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59869002	0.89[ASN][1000 genomes]
rs60284674	0.84[EUR][1000 genomes]
rs60360244	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60383907	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61368496	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61697848	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592235	0.82[ASN][1000 genomes]
rs6592236	0.82[ASN][1000 genomes]
rs7117010	0.94[ASN][1000 genomes]
rs72945906	0.87[ASN][1000 genomes]
rs72945910	0.87[ASN][1000 genomes]
rs72945919	0.87[ASN][1000 genomes]
rs72945944	0.85[ASN][1000 genomes]
rs72945948	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72945956	0.80[ASN][1000 genomes]
rs72945965	0.80[ASN][1000 genomes]
rs72947961	0.80[ASN][1000 genomes]
rs72947963	0.80[ASN][1000 genomes]
rs72947971	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72947974	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72947975	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72947981	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72947999	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72950104	0.80[ASN][1000 genomes]
rs72950107	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950109	0.82[ASN][1000 genomes]
rs72950128	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950129	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950131	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950137	0.82[ASN][1000 genomes]
rs72950141	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72950152	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950153	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950156	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950157	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950158	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950161	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950165	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950167	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950168	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950169	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950175	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950176	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950181	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950182	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72950186	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72951917	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72951920	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951948	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72951958	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72951961	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72951976	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72951982	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72951984	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72951987	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72951995	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72952002	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72953904	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72953907	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72953908	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72953913	0.92[EUR][1000 genomes]
rs72953914	0.92[EUR][1000 genomes]
rs72953916	0.92[EUR][1000 genomes]
rs72953921	0.92[EUR][1000 genomes]
rs72953926	0.92[EUR][1000 genomes]
rs72953932	0.92[EUR][1000 genomes]
rs72953934	0.92[EUR][1000 genomes]
rs72953938	0.92[EUR][1000 genomes]
rs72961540	0.83[ASN][1000 genomes]
rs72961550	0.87[ASN][1000 genomes]
rs72961553	0.87[ASN][1000 genomes]
rs72961554	0.82[ASN][1000 genomes]
rs72961555	0.87[ASN][1000 genomes]
rs72961557	0.87[ASN][1000 genomes]
rs72961558	0.87[ASN][1000 genomes]
rs72961562	0.87[ASN][1000 genomes]
rs72961570	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7924587	0.82[ASN][1000 genomes]
rs7940610	0.81[ASN][1000 genomes]
rs7947098	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85060000-85070600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:85060200-85079000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:85069000-85069600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:85069000-85069600	Enhancers	Fetal Lung	lung

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