Variant report

Variant	rs11822362
Chromosome Location	chr11:85029466-85029467
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85027519..85030292-chr11:85031514..85033844,2	MCF-7	breast:

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs1000799	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10501589	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10501592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11821513	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11823560	0.92[JPT][hapmap]
rs11823732	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11823978	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11825901	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11827372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11827749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs12281150	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs12788992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1602992	0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs17148016	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17148028	0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs17148044	1.00[JPT][hapmap]
rs17148047	1.00[JPT][hapmap]
rs17148049	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17148061	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17148063	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17148067	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17148070	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17148078	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17148086	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148090	0.93[ASN][1000 genomes]
rs17159864	0.93[ASN][1000 genomes]
rs17207843	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17207864	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17208108	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17208150	0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs17208171	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17208192	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17810172	0.92[JPT][hapmap]
rs17810280	0.92[JPT][hapmap]
rs17810291	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17810357	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17810405	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17810429	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17810490	0.93[ASN][1000 genomes]
rs17810611	0.84[ASN][1000 genomes]
rs1812352	0.89[EUR][1000 genomes]
rs1876872	0.86[EUR][1000 genomes]
rs1912266	0.86[EUR][1000 genomes]
rs1914371	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1914372	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2032410	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2036782	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2056182	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2088015	0.93[ASN][1000 genomes]
rs2088016	0.95[ASN][1000 genomes]
rs2088017	0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs2213116	0.94[ASN][1000 genomes]
rs3941173	0.95[ASN][1000 genomes]
rs56306275	0.87[ASN][1000 genomes]
rs57104960	0.94[ASN][1000 genomes]
rs57671189	0.95[ASN][1000 genomes]
rs58028528	0.93[ASN][1000 genomes]
rs58117031	0.84[ASN][1000 genomes]
rs58464081	0.93[ASN][1000 genomes]
rs58515356	0.93[ASN][1000 genomes]
rs58756447	0.96[ASN][1000 genomes]
rs59015145	0.86[EUR][1000 genomes]
rs59464672	0.84[ASN][1000 genomes]
rs59583891	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59713586	0.84[ASN][1000 genomes]
rs59851854	0.95[ASN][1000 genomes]
rs59869002	0.94[ASN][1000 genomes]
rs60030322	0.95[ASN][1000 genomes]
rs60360244	0.91[ASN][1000 genomes]
rs60383907	0.93[ASN][1000 genomes]
rs61368496	0.93[ASN][1000 genomes]
rs61697848	0.89[ASN][1000 genomes]
rs6592235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6592236	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7108893	1.00[JPT][hapmap]
rs7110155	0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs7112335	1.00[JPT][hapmap]
rs7117010	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7129666	1.00[JPT][hapmap]
rs72945906	0.93[ASN][1000 genomes]
rs72945910	0.93[ASN][1000 genomes]
rs72945914	0.95[ASN][1000 genomes]
rs72945917	0.95[ASN][1000 genomes]
rs72945919	0.93[ASN][1000 genomes]
rs72945920	0.95[ASN][1000 genomes]
rs72945921	0.95[ASN][1000 genomes]
rs72945944	0.91[ASN][1000 genomes]
rs72945948	0.91[ASN][1000 genomes]
rs72945956	0.96[ASN][1000 genomes]
rs72945965	0.96[ASN][1000 genomes]
rs72947961	0.96[ASN][1000 genomes]
rs72947963	0.96[ASN][1000 genomes]
rs72947971	0.91[ASN][1000 genomes]
rs72947974	0.91[ASN][1000 genomes]
rs72947975	0.91[ASN][1000 genomes]
rs72947981	0.91[ASN][1000 genomes]
rs72947999	0.91[ASN][1000 genomes]
rs72950104	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72950107	0.93[ASN][1000 genomes]
rs72950109	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72950128	0.93[ASN][1000 genomes]
rs72950129	0.93[ASN][1000 genomes]
rs72950131	0.93[ASN][1000 genomes]
rs72950137	0.98[ASN][1000 genomes]
rs72950141	0.91[ASN][1000 genomes]
rs72950152	0.93[ASN][1000 genomes]
rs72950153	0.93[ASN][1000 genomes]
rs72950156	0.93[ASN][1000 genomes]
rs72950157	0.93[ASN][1000 genomes]
rs72950158	0.93[ASN][1000 genomes]
rs72950161	0.93[ASN][1000 genomes]
rs72950165	0.93[ASN][1000 genomes]
rs72950167	0.93[ASN][1000 genomes]
rs72950168	0.93[ASN][1000 genomes]
rs72950169	0.93[ASN][1000 genomes]
rs72950175	0.93[ASN][1000 genomes]
rs72950176	0.93[ASN][1000 genomes]
rs72950181	0.93[ASN][1000 genomes]
rs72950182	0.93[ASN][1000 genomes]
rs72950186	0.94[ASN][1000 genomes]
rs72951917	0.94[ASN][1000 genomes]
rs72951920	0.84[ASN][1000 genomes]
rs72951948	0.80[ASN][1000 genomes]
rs72953925	0.86[EUR][1000 genomes]
rs72961528	0.93[ASN][1000 genomes]
rs72961539	0.98[ASN][1000 genomes]
rs72961540	0.89[ASN][1000 genomes]
rs72961550	0.93[ASN][1000 genomes]
rs72961552	0.95[ASN][1000 genomes]
rs72961553	0.93[ASN][1000 genomes]
rs72961554	0.98[ASN][1000 genomes]
rs72961555	0.93[ASN][1000 genomes]
rs72961557	0.93[ASN][1000 genomes]
rs72961558	0.93[ASN][1000 genomes]
rs72961562	0.93[ASN][1000 genomes]
rs72961567	0.95[ASN][1000 genomes]
rs72961570	0.93[ASN][1000 genomes]
rs7924587	0.98[ASN][1000 genomes]
rs7938874	0.86[EUR][1000 genomes]
rs7940610	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7947098	0.93[ASN][1000 genomes]
rs7951307	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85025200-85029600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr11:85026000-85030000	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:85026200-85029800	Enhancers	Primary B cells from cord blood	blood
4	chr11:85027600-85030000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:85028800-85030200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr11:85029200-85029800	Weak transcription	GM12878-XiMat	blood

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