Variant report

Variant	rs1000799
Chromosome Location	chr11:85114973-85114974
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85113435..85115119-chr20:58514869..58516491,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132825	Chromatin interaction
ENSG00000196227	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11821513	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11822362	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11823978	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11825901	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11827372	0.81[ASN][1000 genomes]
rs11827749	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1509812	0.84[ASN][1000 genomes]
rs17148086	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17810611	0.87[ASN][1000 genomes]
rs1812352	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1876872	0.93[EUR][1000 genomes]
rs1912266	0.93[EUR][1000 genomes]
rs2036782	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57494426	0.94[ASN][1000 genomes]
rs58117031	0.87[ASN][1000 genomes]
rs58649506	0.91[ASN][1000 genomes]
rs59015145	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59464672	0.87[ASN][1000 genomes]
rs59583891	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59713586	0.87[ASN][1000 genomes]
rs6592235	0.81[ASN][1000 genomes]
rs6592236	0.81[ASN][1000 genomes]
rs7117010	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72950109	0.81[ASN][1000 genomes]
rs72950137	0.81[ASN][1000 genomes]
rs72951920	0.87[ASN][1000 genomes]
rs72951948	0.84[ASN][1000 genomes]
rs72951958	0.94[ASN][1000 genomes]
rs72951961	0.94[ASN][1000 genomes]
rs72951976	0.87[ASN][1000 genomes]
rs72951982	0.84[ASN][1000 genomes]
rs72951984	0.84[ASN][1000 genomes]
rs72951987	0.91[ASN][1000 genomes]
rs72951995	0.91[ASN][1000 genomes]
rs72952002	0.91[ASN][1000 genomes]
rs72953904	0.91[ASN][1000 genomes]
rs72953907	0.91[ASN][1000 genomes]
rs72953908	0.91[ASN][1000 genomes]
rs72953925	0.93[EUR][1000 genomes]
rs7924587	0.81[ASN][1000 genomes]
rs7938874	0.93[EUR][1000 genomes]
rs7940610	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7951307	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv898045	chr11:85094601-85168570	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links