Variant report

Variant	rs72951961
Chromosome Location	chr11:85121822-85121823
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1000799	0.94[ASN][1000 genomes]
rs11827749	0.91[ASN][1000 genomes]
rs12788992	0.85[EUR][1000 genomes]
rs1509812	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17148063	0.81[EUR][1000 genomes]
rs17148067	0.85[EUR][1000 genomes]
rs17148070	0.85[EUR][1000 genomes]
rs17148078	0.85[EUR][1000 genomes]
rs17208108	0.85[EUR][1000 genomes]
rs17208150	0.81[EUR][1000 genomes]
rs17208171	0.85[EUR][1000 genomes]
rs17208192	0.85[EUR][1000 genomes]
rs17810357	0.85[EUR][1000 genomes]
rs17810405	0.81[EUR][1000 genomes]
rs17810429	0.85[EUR][1000 genomes]
rs17810490	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17810611	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1812352	0.91[ASN][1000 genomes]
rs1914372	0.81[EUR][1000 genomes]
rs2036782	0.87[ASN][1000 genomes]
rs2213116	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57104960	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57494426	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58117031	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58464081	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58649506	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59015145	0.89[ASN][1000 genomes]
rs59464672	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59713586	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59869002	0.81[ASN][1000 genomes]
rs60284674	0.81[EUR][1000 genomes]
rs60360244	0.81[EUR][1000 genomes]
rs60952728	0.84[AFR][1000 genomes]
rs61697848	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7117010	0.87[ASN][1000 genomes]
rs72947971	0.85[EUR][1000 genomes]
rs72947974	0.81[EUR][1000 genomes]
rs72947975	0.81[EUR][1000 genomes]
rs72947981	0.81[EUR][1000 genomes]
rs72947999	0.85[EUR][1000 genomes]
rs72950107	0.81[EUR][1000 genomes]
rs72950128	0.85[EUR][1000 genomes]
rs72950129	0.85[EUR][1000 genomes]
rs72950131	0.85[EUR][1000 genomes]
rs72950141	0.81[EUR][1000 genomes]
rs72950152	0.81[EUR][1000 genomes]
rs72950153	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72950156	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72950157	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72950158	0.85[EUR][1000 genomes]
rs72950161	0.85[EUR][1000 genomes]
rs72950165	0.89[EUR][1000 genomes]
rs72950167	0.85[EUR][1000 genomes]
rs72950169	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72950175	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72950176	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72950181	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72950182	0.85[EUR][1000 genomes]
rs72950186	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72951917	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72951920	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72951948	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72951958	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951976	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72951982	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72951984	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72951987	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72951995	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72952002	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72953904	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72953907	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72953908	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72953913	0.89[EUR][1000 genomes]
rs72953914	0.89[EUR][1000 genomes]
rs72953916	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72953921	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72953926	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72953932	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72953934	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72953938	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7947098	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv898045	chr11:85094601-85168570	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85121600-85122200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:85121800-85122200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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