Variant report

Variant	rs72953908
Chromosome Location	chr11:85174777-85174778
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85165504..85168134-chr11:85173876..85175824,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1000799	0.91[ASN][1000 genomes]
rs10501592	0.80[EUR][1000 genomes]
rs11827749	0.94[ASN][1000 genomes]
rs12788992	0.81[EUR][1000 genomes]
rs1509812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17148078	0.81[EUR][1000 genomes]
rs17810490	0.88[EUR][1000 genomes]
rs17810611	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1812352	0.94[ASN][1000 genomes]
rs1876872	0.80[ASN][1000 genomes]
rs1912266	0.80[ASN][1000 genomes]
rs2036782	0.84[ASN][1000 genomes]
rs2213116	0.89[EUR][1000 genomes]
rs57104960	0.92[EUR][1000 genomes]
rs57494426	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58117031	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58464081	0.84[EUR][1000 genomes]
rs58649506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59015145	0.93[ASN][1000 genomes]
rs59464672	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59713586	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61697848	0.84[EUR][1000 genomes]
rs7117010	0.84[ASN][1000 genomes]
rs72950107	0.84[EUR][1000 genomes]
rs72950128	0.81[EUR][1000 genomes]
rs72950129	0.81[EUR][1000 genomes]
rs72950131	0.81[EUR][1000 genomes]
rs72950141	0.84[EUR][1000 genomes]
rs72950152	0.84[EUR][1000 genomes]
rs72950153	0.84[EUR][1000 genomes]
rs72950156	0.81[EUR][1000 genomes]
rs72950157	0.81[EUR][1000 genomes]
rs72950158	0.81[EUR][1000 genomes]
rs72950161	0.81[EUR][1000 genomes]
rs72950165	0.85[EUR][1000 genomes]
rs72950167	0.88[EUR][1000 genomes]
rs72950168	0.81[EUR][1000 genomes]
rs72950169	0.88[EUR][1000 genomes]
rs72950175	0.88[EUR][1000 genomes]
rs72950176	0.88[EUR][1000 genomes]
rs72950181	0.88[EUR][1000 genomes]
rs72950182	0.88[EUR][1000 genomes]
rs72950186	0.89[EUR][1000 genomes]
rs72951917	0.92[EUR][1000 genomes]
rs72951920	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72951948	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72951958	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72951961	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72951976	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72951982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72951984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72951987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72951995	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72952002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72953904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72953907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72953913	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72953914	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72953916	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72953921	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72953925	0.80[ASN][1000 genomes]
rs72953926	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72953932	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72953934	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72953938	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7938874	0.80[ASN][1000 genomes]
rs7947098	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv1035905	chr11:85130543-85220773	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1050363	chr11:85163437-85293233	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv541111	chr11:85163437-85293233	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv982952	chr11:85172590-85181397	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85171400-85182800	Weak transcription	Ovary	ovary

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