Variant report

Variant	rs7117010
Chromosome Location	chr11:85097310-85097311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1000799	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10501592	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11821513	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11822362	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11823732	1.00[ASW][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11823978	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11825901	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11827372	1.00[ASW][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.87[ASN][1000 genomes]
rs11827749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12281150	0.83[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap]
rs12788992	0.93[ASW][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17148044	1.00[JPT][hapmap]
rs17148047	0.83[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs17148049	0.82[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17148061	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17148063	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17148067	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17148070	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17148078	0.93[ASW][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17148086	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17148090	0.82[ASN][1000 genomes]
rs17159864	0.82[ASN][1000 genomes]
rs17207843	0.82[ASN][1000 genomes]
rs17207864	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17208108	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17208150	0.91[JPT][hapmap]
rs17208171	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17208192	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17810172	0.83[CHD][hapmap];0.93[JPT][hapmap]
rs17810280	0.92[JPT][hapmap]
rs17810291	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17810357	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17810405	0.83[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17810429	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17810490	0.82[ASN][1000 genomes]
rs17810611	0.94[ASN][1000 genomes]
rs1812352	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1876872	0.91[EUR][1000 genomes]
rs1912266	0.91[EUR][1000 genomes]
rs1914371	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1914372	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2032410	0.83[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.86[ASN][1000 genomes]
rs2036782	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2056182	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2213116	0.84[ASN][1000 genomes]
rs57104960	0.84[ASN][1000 genomes]
rs57494426	0.87[ASN][1000 genomes]
rs58117031	0.94[ASN][1000 genomes]
rs58464081	0.82[ASN][1000 genomes]
rs58649506	0.84[ASN][1000 genomes]
rs58756447	0.86[ASN][1000 genomes]
rs59015145	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59464672	0.94[ASN][1000 genomes]
rs59583891	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59713586	0.94[ASN][1000 genomes]
rs59869002	0.84[ASN][1000 genomes]
rs60360244	0.80[ASN][1000 genomes]
rs6592235	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6592236	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7108893	1.00[JPT][hapmap]
rs7112335	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs7129666	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs72945920	0.84[ASN][1000 genomes]
rs72945921	0.84[ASN][1000 genomes]
rs72945944	0.80[ASN][1000 genomes]
rs72945948	0.80[ASN][1000 genomes]
rs72945956	0.86[ASN][1000 genomes]
rs72945965	0.86[ASN][1000 genomes]
rs72947961	0.86[ASN][1000 genomes]
rs72947963	0.86[ASN][1000 genomes]
rs72947971	0.80[ASN][1000 genomes]
rs72947974	0.80[ASN][1000 genomes]
rs72947975	0.80[ASN][1000 genomes]
rs72947981	0.80[ASN][1000 genomes]
rs72947999	0.80[ASN][1000 genomes]
rs72950104	0.86[ASN][1000 genomes]
rs72950107	0.82[ASN][1000 genomes]
rs72950109	0.87[ASN][1000 genomes]
rs72950128	0.82[ASN][1000 genomes]
rs72950129	0.82[ASN][1000 genomes]
rs72950131	0.82[ASN][1000 genomes]
rs72950137	0.87[ASN][1000 genomes]
rs72950141	0.80[ASN][1000 genomes]
rs72950152	0.82[ASN][1000 genomes]
rs72950153	0.82[ASN][1000 genomes]
rs72950156	0.82[ASN][1000 genomes]
rs72950157	0.82[ASN][1000 genomes]
rs72950158	0.82[ASN][1000 genomes]
rs72950161	0.82[ASN][1000 genomes]
rs72950165	0.82[ASN][1000 genomes]
rs72950167	0.82[ASN][1000 genomes]
rs72950168	0.82[ASN][1000 genomes]
rs72950169	0.82[ASN][1000 genomes]
rs72950175	0.82[ASN][1000 genomes]
rs72950176	0.82[ASN][1000 genomes]
rs72950181	0.82[ASN][1000 genomes]
rs72950182	0.82[ASN][1000 genomes]
rs72950186	0.84[ASN][1000 genomes]
rs72951917	0.84[ASN][1000 genomes]
rs72951920	0.94[ASN][1000 genomes]
rs72951948	0.91[ASN][1000 genomes]
rs72951958	0.87[ASN][1000 genomes]
rs72951961	0.87[ASN][1000 genomes]
rs72951976	0.81[ASN][1000 genomes]
rs72951987	0.84[ASN][1000 genomes]
rs72951995	0.84[ASN][1000 genomes]
rs72952002	0.84[ASN][1000 genomes]
rs72953904	0.84[ASN][1000 genomes]
rs72953907	0.84[ASN][1000 genomes]
rs72953908	0.84[ASN][1000 genomes]
rs72953925	0.91[EUR][1000 genomes]
rs7924587	0.87[ASN][1000 genomes]
rs7938874	0.91[EUR][1000 genomes]
rs7940610	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7947098	0.82[ASN][1000 genomes]
rs7951307	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898043	chr11:84895033-85148689	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv898045	chr11:85094601-85168570	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85096000-85099000	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:85096200-85097400	Enhancers	HSMM	muscle
3	chr11:85096200-85097600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:85096200-85097600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr11:85096400-85097800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:85096400-85097800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:85096600-85097400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:85096600-85097400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr11:85096600-85097400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:85096800-85097400	Enhancers	HSMMtube	muscle

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