Variant report

Variant	rs72961528
Chromosome Location	chr11:84848626-84848627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr11:84848614-84849047	T-47D	breast:	n/a	n/a
2	FOXM1	chr11:84848619-84848954	MCF-7	breast:	n/a	n/a
3	GATA3	chr11:84848575-84848967	T-47D	breast:	n/a	chr11:84848665-84848677 chr11:84848751-84848761
4	POLR2A	chr11:84848572-84848726	MCF10A-Er-Src	breast:	n/a	n/a
5	ESR1	chr11:84848191-84849082	T-47D	breast:	n/a	n/a
6	ESR1	chr11:84848589-84849001	T-47D	breast:	n/a	n/a
7	ESR1	chr11:84848600-84848977	T-47D	breast:	n/a	n/a
8	SIN3AK20	chr11:84848352-84849160	MCF-7	breast:	n/a	n/a
9	ESR1	chr11:84848306-84848990	T-47D	breast:	n/a	n/a
10	NR2F2	chr11:84848442-84849074	MCF-7	breast:	n/a	n/a
11	GATA3	chr11:84848523-84849075	MCF-7	breast:	n/a	chr11:84848665-84848677 chr11:84848751-84848761

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84847470..84849128-chr11:84849752..84852048,2	MCF-7	breast:

Variant related genes	Relation type
DLG2	TF binding region

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10501589	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501592	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11822362	0.93[ASN][1000 genomes]
rs11823732	0.98[ASN][1000 genomes]
rs11823978	0.91[ASN][1000 genomes]
rs11825901	0.91[ASN][1000 genomes]
rs11827372	0.91[ASN][1000 genomes]
rs12788992	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1602992	0.91[ASN][1000 genomes]
rs17148016	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17148028	0.85[ASN][1000 genomes]
rs17148049	0.93[ASN][1000 genomes]
rs17148061	0.93[ASN][1000 genomes]
rs17148063	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148067	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148070	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148078	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17148086	0.91[ASN][1000 genomes]
rs17148090	0.96[ASN][1000 genomes]
rs17159864	0.96[ASN][1000 genomes]
rs17207605	0.85[ASN][1000 genomes]
rs17207843	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17207864	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208108	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208150	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17208171	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208192	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17809753	0.81[ASN][1000 genomes]
rs17810172	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17810291	0.93[ASN][1000 genomes]
rs17810357	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810405	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810429	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810490	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1914371	0.93[ASN][1000 genomes]
rs1914372	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2032410	0.93[ASN][1000 genomes]
rs2056182	0.93[ASN][1000 genomes]
rs2088015	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088016	0.91[ASN][1000 genomes]
rs2088017	0.91[ASN][1000 genomes]
rs2213116	0.98[ASN][1000 genomes]
rs3941173	0.91[ASN][1000 genomes]
rs56306275	0.94[ASN][1000 genomes]
rs57671189	0.91[ASN][1000 genomes]
rs58028528	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58464081	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58515356	0.89[ASN][1000 genomes]
rs58756447	0.93[ASN][1000 genomes]
rs59583891	0.91[ASN][1000 genomes]
rs59851854	0.91[ASN][1000 genomes]
rs59869002	0.98[ASN][1000 genomes]
rs60030322	0.91[ASN][1000 genomes]
rs60284674	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60360244	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60383907	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61368496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61697848	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6592235	0.91[ASN][1000 genomes]
rs6592236	0.91[ASN][1000 genomes]
rs7110155	0.91[ASN][1000 genomes]
rs72945906	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945910	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945914	0.91[ASN][1000 genomes]
rs72945917	0.91[ASN][1000 genomes]
rs72945919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72945920	0.91[ASN][1000 genomes]
rs72945921	0.91[ASN][1000 genomes]
rs72945944	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72945948	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72945956	0.93[ASN][1000 genomes]
rs72945965	0.93[ASN][1000 genomes]
rs72947961	0.93[ASN][1000 genomes]
rs72947963	0.93[ASN][1000 genomes]
rs72947971	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947974	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947975	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947981	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947999	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72950104	0.93[ASN][1000 genomes]
rs72950107	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950109	0.91[ASN][1000 genomes]
rs72950128	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950129	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950131	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950137	0.91[ASN][1000 genomes]
rs72950141	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72950152	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950153	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950156	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950157	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950158	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950161	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950165	0.96[ASN][1000 genomes]
rs72950167	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950168	0.96[ASN][1000 genomes]
rs72950169	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950175	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950176	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950181	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950182	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950186	0.98[ASN][1000 genomes]
rs72961539	0.94[ASN][1000 genomes]
rs72961540	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72961550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961552	0.91[ASN][1000 genomes]
rs72961553	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961554	0.94[ASN][1000 genomes]
rs72961555	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961557	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961558	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961567	0.91[ASN][1000 genomes]
rs72961570	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924587	0.91[ASN][1000 genomes]
rs7940610	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84848400-84848800	Enhancers	Colon Smooth Muscle	Colon
2	chr11:84848400-84849800	Enhancers	Liver	Liver
3	chr11:84848600-84848800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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