Variant report

Variant	rs17809753
Chromosome Location	chr11:84758548-84758549
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10501589	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs11823560	1.00[CHB][hapmap]
rs11823732	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1602992	1.00[CHB][hapmap]
rs17148016	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs17148028	1.00[CHB][hapmap]
rs17148044	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17148047	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17148049	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17207605	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17207843	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs17207864	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17809597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17810172	1.00[CHB][hapmap]
rs17810280	1.00[CEU][hapmap]
rs17810291	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2032410	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2056182	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2088015	0.81[ASN][1000 genomes]
rs2088017	1.00[CHB][hapmap]
rs2105635	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs58028528	0.81[ASN][1000 genomes]
rs60383907	0.81[ASN][1000 genomes]
rs61368496	0.81[ASN][1000 genomes]
rs7108893	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7110155	1.00[CHB][hapmap]
rs7112335	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7129666	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs72945906	0.81[ASN][1000 genomes]
rs72945910	0.81[ASN][1000 genomes]
rs72945919	0.81[ASN][1000 genomes]
rs72957781	0.81[EUR][1000 genomes]
rs72957799	0.91[ASN][1000 genomes]
rs72959763	1.00[EUR][1000 genomes]
rs72961518	1.00[EUR][1000 genomes]
rs72961528	0.81[ASN][1000 genomes]
rs72961550	0.81[ASN][1000 genomes]
rs72961553	0.81[ASN][1000 genomes]
rs72961555	0.81[ASN][1000 genomes]
rs72961557	0.81[ASN][1000 genomes]
rs72961558	0.81[ASN][1000 genomes]
rs72961562	0.81[ASN][1000 genomes]
rs72961570	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1048051	chr11:84419442-84784233	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541109	chr11:84419442-84784233	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv430415	chr11:84661652-84833852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1055097	chr11:84672444-84810441	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1040393	chr11:84708402-84866594	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84756400-84762800	Weak transcription	Fetal Brain Female	brain

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