Variant report

Variant	rs72945906
Chromosome Location	chr11:84879252-84879253
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10501589	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501592	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11821513	0.93[ASN][1000 genomes]
rs11822362	0.93[ASN][1000 genomes]
rs11823732	0.98[ASN][1000 genomes]
rs11823978	0.91[ASN][1000 genomes]
rs11825901	0.91[ASN][1000 genomes]
rs11827372	0.91[ASN][1000 genomes]
rs12788992	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1602992	0.91[ASN][1000 genomes]
rs17148016	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17148028	0.85[ASN][1000 genomes]
rs17148049	0.93[ASN][1000 genomes]
rs17148061	0.93[ASN][1000 genomes]
rs17148063	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148067	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148070	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17148078	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17148086	0.91[ASN][1000 genomes]
rs17148090	0.96[ASN][1000 genomes]
rs17159864	0.96[ASN][1000 genomes]
rs17207605	0.85[ASN][1000 genomes]
rs17207843	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17207864	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208108	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208150	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17208171	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17208192	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17809753	0.81[ASN][1000 genomes]
rs17810172	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17810291	0.93[ASN][1000 genomes]
rs17810357	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810405	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810429	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810490	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17810611	0.87[ASN][1000 genomes]
rs1914371	0.93[ASN][1000 genomes]
rs1914372	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2032410	0.93[ASN][1000 genomes]
rs2036782	0.82[ASN][1000 genomes]
rs2056182	0.93[ASN][1000 genomes]
rs2088015	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088016	0.91[ASN][1000 genomes]
rs2088017	0.91[ASN][1000 genomes]
rs2213116	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3941173	0.91[ASN][1000 genomes]
rs56306275	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57104960	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57671189	0.91[ASN][1000 genomes]
rs58028528	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58117031	0.87[ASN][1000 genomes]
rs58464081	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58515356	0.89[ASN][1000 genomes]
rs58756447	0.93[ASN][1000 genomes]
rs59464672	0.87[ASN][1000 genomes]
rs59583891	0.91[ASN][1000 genomes]
rs59713586	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59851854	0.91[ASN][1000 genomes]
rs59869002	0.98[ASN][1000 genomes]
rs60030322	0.91[ASN][1000 genomes]
rs60284674	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60360244	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60383907	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61368496	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61697848	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6592235	0.91[ASN][1000 genomes]
rs6592236	0.91[ASN][1000 genomes]
rs7110155	0.91[ASN][1000 genomes]
rs72945910	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945914	0.91[ASN][1000 genomes]
rs72945917	0.91[ASN][1000 genomes]
rs72945919	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72945920	0.91[ASN][1000 genomes]
rs72945921	0.91[ASN][1000 genomes]
rs72945944	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72945948	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72945956	0.93[ASN][1000 genomes]
rs72945965	0.93[ASN][1000 genomes]
rs72947961	0.93[ASN][1000 genomes]
rs72947963	0.93[ASN][1000 genomes]
rs72947971	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947974	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947975	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947981	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72947999	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72950104	0.93[ASN][1000 genomes]
rs72950107	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950109	0.91[ASN][1000 genomes]
rs72950128	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950129	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950131	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950137	0.91[ASN][1000 genomes]
rs72950141	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72950152	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950153	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950156	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950157	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950158	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950161	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950165	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950167	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950168	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950169	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950175	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950176	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950181	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950182	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72950186	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72951917	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72951920	0.87[ASN][1000 genomes]
rs72951948	0.83[ASN][1000 genomes]
rs72961528	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961539	0.94[ASN][1000 genomes]
rs72961540	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72961550	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961552	0.91[ASN][1000 genomes]
rs72961553	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961554	0.94[ASN][1000 genomes]
rs72961555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961557	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961558	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961562	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961567	0.91[ASN][1000 genomes]
rs72961570	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924587	0.91[ASN][1000 genomes]
rs7940610	0.89[ASN][1000 genomes]
rs7947098	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527535	chr11:84724795-84895033	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv528491	chr11:84724795-84895033	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1052380	chr11:84864551-84920320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv898042	chr11:84877221-84965437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84866000-84881200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:84878200-84879400	Enhancers	NHEK	skin
3	chr11:84878600-84879400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr11:84878600-84880800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:84878800-84880200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:84878800-84881200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:84878800-84881200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:84878800-84881400	Weak transcription	HSMMtube	muscle
9	chr11:84879000-84880400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:84879000-84880800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:84879000-84881200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:84879000-84881800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:84879200-84880200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:84879200-84880600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:84879200-84880800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:84879200-84881000	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links