Variant report

Variant	rs17208525
Chromosome Location	chr11:85341486-85341487
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85335097..85341629-chr11:85372332..85377145,15	MCF-7	breast:
2	chr11:85338390..85343522-chr11:85356567..85360273,9	MCF-7	breast:
3	chr11:85337127..85343160-chr11:85357064..85364111,20	MCF-7	breast:
4	chr11:85336278..85337921-chr11:85339997..85342218,2	K562	blood:
5	chr11:85339692..85341655-chr11:85354490..85356940,3	MCF-7	breast:
6	chr11:85339009..85341101-chr11:85341259..85343542,2	K562	blood:
7	chr11:85337740..85341959-chr11:85373645..85377756,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171202	Chromatin interaction
ENSG00000137504	Chromatin interaction
ENSG00000171204	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11234386	0.91[ASN][1000 genomes]
rs11234387	0.91[ASN][1000 genomes]
rs11234388	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs11234389	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs11234390	0.86[ASN][1000 genomes]
rs11234391	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs11234393	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs11234397	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11607789	0.85[CHB][hapmap]
rs11827749	0.82[CHB][hapmap]
rs17148355	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs17148514	0.85[CHB][hapmap]
rs17208602	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17208616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17810701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17810766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17810802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17810855	1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17811120	1.00[CHB][hapmap]
rs2044393	1.00[CHB][hapmap]
rs2276018	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs2304342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2304343	0.86[JPT][hapmap]
rs2374638	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs494119	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs56695336	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57431471	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58631677	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59508078	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs616309	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs645798	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs678376	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs72953967	0.84[ASN][1000 genomes]
rs72953982	0.87[ASN][1000 genomes]
rs72953991	0.87[ASN][1000 genomes]
rs72953995	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72955904	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72955912	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72955918	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72955922	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72955939	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958012	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72958014	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72958027	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85340200-85348400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:85340200-85351800	Weak transcription	Gastric	stomach
3	chr11:85340200-85352400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:85340400-85341600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr11:85340400-85341800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:85340400-85342000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:85340400-85342000	Weak transcription	Placenta	Placenta
8	chr11:85340400-85345400	Weak transcription	Lung	lung
9	chr11:85340400-85349400	Weak transcription	Pancreas	Pancrea
10	chr11:85340400-85351000	Weak transcription	Esophagus	oesophagus
11	chr11:85340600-85341600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:85340600-85341600	Enhancers	Colon Smooth Muscle	Colon
13	chr11:85340600-85341600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr11:85340600-85341800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:85340600-85341800	Enhancers	Brain Anterior Caudate	brain
16	chr11:85340600-85341800	Enhancers	Fetal Heart	heart
17	chr11:85340600-85341800	Weak transcription	Fetal Thymus	thymus
18	chr11:85340600-85342000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr11:85340600-85342000	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr11:85340600-85342200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr11:85340600-85345000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr11:85340600-85345200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr11:85340600-85345200	Weak transcription	Brain Substantia Nigra	brain
24	chr11:85340600-85345400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:85340600-85345400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:85340600-85345400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr11:85340600-85345400	Weak transcription	Fetal Muscle Leg	muscle
28	chr11:85340600-85345400	Weak transcription	Left Ventricle	heart
29	chr11:85340600-85345600	Weak transcription	Ovary	ovary
30	chr11:85340600-85345800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:85340600-85347600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:85340600-85350000	Weak transcription	Stomach Mucosa	stomach
33	chr11:85340600-85352800	Weak transcription	Fetal Brain Male	brain
34	chr11:85340600-85358200	Weak transcription	Aorta	Aorta
35	chr11:85340800-85341600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr11:85340800-85341600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:85340800-85341600	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr11:85340800-85341600	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr11:85340800-85341600	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr11:85340800-85341800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:85340800-85341800	Weak transcription	Colonic Mucosa	Colon
42	chr11:85340800-85342000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr11:85340800-85342000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:85340800-85342400	Enhancers	Psoas Muscle	Psoas
45	chr11:85340800-85344800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr11:85340800-85345000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr11:85340800-85345200	Weak transcription	Fetal Lung	lung
48	chr11:85340800-85345400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:85340800-85350000	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr11:85340800-85358200	Weak transcription	Fetal Stomach	stomach

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