Variant report

Variant	rs72955904
Chromosome Location	chr11:85285842-85285843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85283403..85286347-chr11:85339640..85342131,2	MCF-7	breast:
2	chr11:85280987..85284444-chr11:85284671..85287173,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171204	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11234386	0.84[ASN][1000 genomes]
rs11234387	0.84[ASN][1000 genomes]
rs11234388	0.84[ASN][1000 genomes]
rs11234390	0.85[ASN][1000 genomes]
rs11234391	0.85[ASN][1000 genomes]
rs17148355	0.84[ASN][1000 genomes]
rs17208525	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17208602	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17208616	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17810701	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17810766	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17810802	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17810855	0.88[ASN][1000 genomes]
rs2276018	0.86[ASN][1000 genomes]
rs2304342	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2374638	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs494119	1.00[ASN][1000 genomes]
rs56695336	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57431471	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58631677	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59508078	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs616309	1.00[ASN][1000 genomes]
rs645798	1.00[ASN][1000 genomes]
rs72953916	0.81[ASN][1000 genomes]
rs72953921	0.81[ASN][1000 genomes]
rs72953926	0.81[ASN][1000 genomes]
rs72953932	0.81[ASN][1000 genomes]
rs72953934	0.81[ASN][1000 genomes]
rs72953938	0.81[ASN][1000 genomes]
rs72953967	0.90[ASN][1000 genomes]
rs72953982	0.94[ASN][1000 genomes]
rs72953991	0.94[ASN][1000 genomes]
rs72953995	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72955912	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72955918	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72955922	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72955939	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72958012	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72958014	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72958027	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv1050363	chr11:85163437-85293233	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv541111	chr11:85163437-85293233	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv898046	chr11:85180409-85300458	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
10	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv898049	chr11:85231475-85292310	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85248800-85292000	Weak transcription	Aorta	Aorta
2	chr11:85284000-85286600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:85284200-85292400	Weak transcription	Left Ventricle	heart
4	chr11:85284400-85293800	Weak transcription	Ovary	ovary

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