Variant report

Variant	rs72955918
Chromosome Location	chr11:85300586-85300587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85299211..85301979-chr11:85303362..85305385,2	K562	blood:
2	chr11:84494003..84496842-chr11:85300062..85301679,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17208525	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17208602	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17208616	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17810701	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17810766	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17810802	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2304342	0.93[EUR][1000 genomes]
rs2374638	0.90[EUR][1000 genomes]
rs494119	0.83[ASN][1000 genomes]
rs56695336	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57431471	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58631677	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59508078	0.93[EUR][1000 genomes]
rs616309	0.83[ASN][1000 genomes]
rs645798	0.83[ASN][1000 genomes]
rs72953977	0.91[ASN][1000 genomes]
rs72953987	0.93[ASN][1000 genomes]
rs72953995	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72955904	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72955912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72955922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72955939	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72958012	0.93[EUR][1000 genomes]
rs72958014	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72958027	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv898048	chr11:85206156-85404138	Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85299800-85300600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr11:85299800-85300800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
3	chr11:85300200-85300600	Weak transcription	Aorta	Aorta
4	chr11:85300200-85300600	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:85300200-85300600	Enhancers	Fetal Stomach	stomach
6	chr11:85300200-85300800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:85300400-85300600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:85300400-85300600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:85300400-85300800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:85300400-85303800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:85300400-85310200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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