Variant report

Variant	rs11234568
Chromosome Location	chr11:85876222-85876223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85778960..85780498-chr11:85875598..85877997,2	MCF-7	breast:
2	chr11:85873974..85877106-chr11:85877534..85882400,5	K562	blood:
3	chr11:85874463..85876694-chr11:85880902..85882501,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10792833	0.92[ASN][1000 genomes]
rs11602811	0.81[CEU][hapmap]
rs11603136	0.82[EUR][1000 genomes]
rs3901732	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7107958	0.94[ASN][1000 genomes]
rs7934191	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85868800-85876600	Enhancers	Hela-S3	cervix
2	chr11:85873400-85878800	Weak transcription	HepG2	liver
3	chr11:85873600-85878800	Weak transcription	Left Ventricle	heart
4	chr11:85873600-85883800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:85873600-85883800	Weak transcription	HSMMtube	muscle
6	chr11:85873600-85884000	Weak transcription	Right Atrium	heart
7	chr11:85873800-85883800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:85874000-85885400	Weak transcription	Small Intestine	intestine
9	chr11:85874200-85884000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr11:85874400-85878600	Weak transcription	Fetal Lung	lung
11	chr11:85874600-85876800	Enhancers	K562	blood
12	chr11:85874600-85878600	Weak transcription	Fetal Stomach	stomach
13	chr11:85874600-85878800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:85874600-85884000	Weak transcription	A549	lung
15	chr11:85875000-85883800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:85875200-85878600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:85875200-85878800	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:85875400-85876400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:85875400-85876600	Enhancers	HMEC	breast
20	chr11:85875400-85883600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:85875600-85876400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:85875600-85876800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr11:85875800-85876600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:85875800-85876600	Enhancers	NHEK	skin
25	chr11:85875800-85878800	Weak transcription	Placenta	Placenta
26	chr11:85875800-85883800	Weak transcription	HSMM	muscle
27	chr11:85876000-85876400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:85876000-85878200	Weak transcription	Adipose Nuclei	Adipose
29	chr11:85876000-85884000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:85876200-85876400	Enhancers	Colon Smooth Muscle	Colon
31	chr11:85876200-85878600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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