Variant report

Variant	rs11234909
Chromosome Location	chr11:86733470-86733471
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10792897	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10898576	0.86[ASN][1000 genomes]
rs10898580	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10898586	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10898587	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10898588	0.80[EUR][1000 genomes]
rs11234907	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11234910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11234911	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234923	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11234925	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11234930	0.82[EUR][1000 genomes]
rs11234933	0.82[EUR][1000 genomes]
rs60263007	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv3342325	chr11:86732254-86734352	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86730800-86734000	Weak transcription	Right Atrium	heart
2	chr11:86731000-86733800	Weak transcription	Left Ventricle	heart
3	chr11:86731000-86733800	Weak transcription	Right Ventricle	heart
4	chr11:86731400-86737800	Weak transcription	Fetal Heart	heart
5	chr11:86731800-86748200	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:86732400-86739400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:86732600-86738800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:86733200-86734200	Enhancers	HepG2	liver
9	chr11:86733400-86733600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:86733400-86733600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:86733400-86734000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr11:86733400-86734000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr11:86733400-86734200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:86733400-86734200	Enhancers	Colon Smooth Muscle	Colon
15	chr11:86733400-86734400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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