Variant report

Variant	rs11234907
Chromosome Location	chr11:86728082-86728083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10792897	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10792906	0.83[EUR][1000 genomes]
rs10792908	0.83[EUR][1000 genomes]
rs10792910	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs10898576	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10898580	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898586	0.87[EUR][1000 genomes]
rs10898587	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes]
rs10898588	0.86[EUR][1000 genomes]
rs10898589	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap]
rs10898590	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes]
rs10898593	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs10898594	0.83[EUR][1000 genomes]
rs10898595	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs10898600	0.83[EUR][1000 genomes]
rs10898603	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs10898604	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs10898605	0.83[EUR][1000 genomes]
rs10898606	0.83[EUR][1000 genomes]
rs10898607	0.83[EUR][1000 genomes]
rs10898609	0.83[EUR][1000 genomes]
rs10898610	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs10898613	0.88[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap]
rs10898619	0.88[CEU][hapmap];1.00[MEX][hapmap]
rs11234909	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11234910	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11234911	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11234923	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11234925	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11234930	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.87[EUR][1000 genomes]
rs11234932	0.85[EUR][1000 genomes]
rs11234933	0.87[EUR][1000 genomes]
rs11234937	0.83[EUR][1000 genomes]
rs11234940	0.82[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs11234941	0.83[EUR][1000 genomes]
rs11234945	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs11234946	0.83[EUR][1000 genomes]
rs11234950	0.83[EUR][1000 genomes]
rs11234952	0.83[EUR][1000 genomes]
rs11234958	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs11234961	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs11234962	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes]
rs11234964	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes]
rs11234965	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes]
rs11234966	0.83[EUR][1000 genomes]
rs11234968	0.83[EUR][1000 genomes]
rs11234969	0.83[EUR][1000 genomes]
rs11234972	0.83[EUR][1000 genomes]
rs11234976	0.81[EUR][1000 genomes]
rs11234977	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs11234982	0.83[EUR][1000 genomes]
rs11234989	0.83[EUR][1000 genomes]
rs11234996	0.88[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap]
rs11533276	0.80[EUR][1000 genomes]
rs11820668	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes]
rs12223784	0.86[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs12360980	0.83[EUR][1000 genomes]
rs12363760	0.83[EUR][1000 genomes]
rs1531144	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs1968741	0.83[EUR][1000 genomes]
rs60263007	0.81[ASN][1000 genomes]
rs6592334	0.80[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap]
rs67946471	0.83[EUR][1000 genomes]
rs7117731	0.83[EUR][1000 genomes]
rs7124448	0.88[CEU][hapmap]
rs7127557	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs9666468	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86725000-86730400	Weak transcription	Right Atrium	heart
2	chr11:86725800-86730400	Weak transcription	Left Ventricle	heart
3	chr11:86725800-86730600	Weak transcription	Fetal Lung	lung
4	chr11:86726000-86730400	Weak transcription	Adipose Nuclei	Adipose
5	chr11:86726000-86730400	Weak transcription	Fetal Stomach	stomach
6	chr11:86726000-86730600	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:86726000-86731000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:86726200-86730600	Weak transcription	Fetal Heart	heart
9	chr11:86726200-86731400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:86727600-86729800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:86728000-86728200	Enhancers	Lung	lung
12	chr11:86728000-86731000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:86728000-86732800	Enhancers	HepG2	liver

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