Variant report

Variant	rs7124448
Chromosome Location	chr11:86908718-86908719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86900182..86903492-chr11:86905711..86910083,4	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10792906	0.80[ASN][1000 genomes]
rs10792908	0.92[ASN][1000 genomes]
rs10792909	0.84[CHB][hapmap];0.92[ASN][1000 genomes]
rs10792910	1.00[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.88[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.92[ASN][1000 genomes]
rs10792929	0.86[JPT][hapmap]
rs10898587	0.88[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap]
rs10898589	0.88[CEU][hapmap];0.88[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.88[TSI][hapmap]
rs10898590	0.88[CEU][hapmap];0.88[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.88[TSI][hapmap]
rs10898593	0.88[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs10898594	0.80[ASN][1000 genomes]
rs10898595	0.88[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs10898600	0.84[ASN][1000 genomes]
rs10898603	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10898604	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10898605	0.91[ASN][1000 genomes]
rs10898606	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10898607	0.92[ASN][1000 genomes]
rs10898608	0.92[ASN][1000 genomes]
rs10898609	0.92[ASN][1000 genomes]
rs10898610	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs10898613	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898619	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10898624	0.86[JPT][hapmap]
rs11234911	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs11234925	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs11234930	0.88[CEU][hapmap];0.88[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs11234940	0.86[JPT][hapmap]
rs11234945	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11234950	0.80[ASN][1000 genomes]
rs11234952	0.80[ASN][1000 genomes]
rs11234958	0.88[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs11234961	0.88[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs11234962	0.88[CEU][hapmap];0.88[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.88[TSI][hapmap];0.80[ASN][1000 genomes]
rs11234964	0.88[CEU][hapmap];0.88[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.88[TSI][hapmap];0.80[ASN][1000 genomes]
rs11234965	0.88[CEU][hapmap];0.88[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.88[TSI][hapmap];0.80[ASN][1000 genomes]
rs11234966	0.80[ASN][1000 genomes]
rs11234968	0.84[ASN][1000 genomes]
rs11234969	0.84[ASN][1000 genomes]
rs11234972	0.92[ASN][1000 genomes]
rs11234976	0.84[ASN][1000 genomes]
rs11234977	0.92[ASN][1000 genomes]
rs11234982	0.92[ASN][1000 genomes]
rs11234989	0.92[ASN][1000 genomes]
rs11234991	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11234993	0.90[ASN][1000 genomes]
rs11234996	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11235008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11235010	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11235041	0.86[JPT][hapmap]
rs11533276	0.84[ASN][1000 genomes]
rs11820668	0.88[CEU][hapmap];0.88[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.88[TSI][hapmap]
rs12223784	0.86[CEU][hapmap];0.81[CHB][hapmap]
rs12224600	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs12363760	0.80[ASN][1000 genomes]
rs1531144	0.88[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]
rs6592334	0.88[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap]
rs67946471	0.80[ASN][1000 genomes]
rs7117731	0.86[ASN][1000 genomes]
rs7122315	0.86[JPT][hapmap]
rs7127557	0.88[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap]
rs9666468	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv898059	chr11:86754948-86949369	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv1045057	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv541121	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv468777	chr11:86794856-86985581	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv555707	chr11:86794856-86985581	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv898060	chr11:86822077-86912633	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv898061	chr11:86850483-86944982	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv468778	chr11:86850483-86974576	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv555708	chr11:86850483-86974576	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv898063	chr11:86864277-86944982	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv898064	chr11:86864277-87013438	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	esv2829956	chr11:86872504-87025059	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv525787	chr11:86889284-86920178	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv898065	chr11:86891077-86984439	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv898066	chr11:86891077-86989134	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv898067	chr11:86892865-86935783	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86882000-86928000	Weak transcription	Left Ventricle	heart
2	chr11:86887600-86909400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:86890200-86919000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:86891000-86914200	Weak transcription	HepG2	liver
5	chr11:86891800-86929400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:86892800-86915000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:86900000-86914200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:86905600-86912400	Weak transcription	K562	blood
9	chr11:86906000-86931000	Weak transcription	Fetal Lung	lung
10	chr11:86906800-86910200	Weak transcription	Ovary	ovary
11	chr11:86908400-86910000	Enhancers	Fetal Heart	heart

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