Variant report

Variant	rs11234958
Chromosome Location	chr11:86788716-86788717
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86773350..86775874-chr11:86786933..86789262,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10792897	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10792906	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792908	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10792909	0.87[CHB][hapmap];0.89[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10792910	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898580	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10898586	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10898587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898588	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10898590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898594	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898600	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898603	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898604	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898605	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898606	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10898607	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898608	0.87[ASN][1000 genomes]
rs10898609	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898610	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10898613	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10898619	0.88[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap]
rs11234907	0.83[EUR][1000 genomes]
rs11234911	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs11234923	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11234925	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11234930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11234932	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11234933	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11234937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11234940	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11234941	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11234945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11234946	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11234950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234966	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234968	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11234969	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11234972	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11234976	0.98[EUR][1000 genomes]
rs11234977	0.85[CEU][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11234982	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11234989	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11234991	0.84[ASN][1000 genomes]
rs11234993	0.85[ASN][1000 genomes]
rs11234996	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11533276	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11820668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12223784	0.87[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12224600	0.88[CEU][hapmap];0.88[JPT][hapmap]
rs12360980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12363760	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1968741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2512325	0.81[CHB][hapmap]
rs6592334	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs67946471	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117731	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7124448	0.88[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs7127557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9666468	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv898058	chr11:86754948-86889284	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv898059	chr11:86754948-86949369	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	esv1844274	chr11:86776992-86872908	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv468776	chr11:86788716-86826422	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv555706	chr11:86788716-86826422	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86769200-86791200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr11:86769200-86792400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:86770400-86808200	Weak transcription	HUVEC	blood vessel
4	chr11:86773000-86790800	Weak transcription	NHLF	lung
5	chr11:86773000-86792000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr11:86774600-86792400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:86774800-86806400	Weak transcription	Small Intestine	intestine
8	chr11:86775600-86791400	Weak transcription	HSMM	muscle
9	chr11:86776400-86792400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:86776600-86793000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:86776600-86815600	Weak transcription	HSMMtube	muscle
12	chr11:86777400-86792400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr11:86778400-86792400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:86778800-86789000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:86778800-86789600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:86778800-86791800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:86778800-86792400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:86779000-86790200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:86779400-86792400	Weak transcription	GM12878-XiMat	blood
20	chr11:86779600-86792200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr11:86780200-86789400	Strong transcription	Adipose Nuclei	Adipose
22	chr11:86782600-86795400	Weak transcription	Fetal Heart	heart
23	chr11:86783000-86814000	Weak transcription	Hela-S3	cervix
24	chr11:86783200-86799000	Weak transcription	Psoas Muscle	Psoas
25	chr11:86784000-86792000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:86785600-86789200	Strong transcription	Dnd41	blood
27	chr11:86786400-86791400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:86786600-86789000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:86786600-86789000	Genic enhancers	HepG2	liver
30	chr11:86786600-86789400	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:86786800-86788800	Strong transcription	Duodenum Mucosa	Duodenum
32	chr11:86786800-86789000	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:86786800-86789200	Strong transcription	Stomach Smooth Muscle	stomach
34	chr11:86786800-86789400	Strong transcription	Primary hematopoietic stem cells	blood
35	chr11:86787000-86789000	Strong transcription	K562	blood
36	chr11:86787200-86791800	Weak transcription	Colonic Mucosa	Colon
37	chr11:86787200-86794200	Weak transcription	Brain Anterior Caudate	brain
38	chr11:86787200-86795400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr11:86787400-86819600	Weak transcription	NH-A	brain
40	chr11:86787600-86788800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:86787600-86789200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:86787600-86791800	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:86787600-86792000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:86787600-86804200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:86787600-86825200	Weak transcription	Brain Substantia Nigra	brain
46	chr11:86787800-86792400	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr11:86787800-86792400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:86787800-86797200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:86787800-86797200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:86787800-86798200	Weak transcription	Spleen	Spleen

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