Variant report

Variant	rs10898619
Chromosome Location	chr11:86922561-86922562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86921997..86924234-chr11:86927310..86928877,2	K562	blood:
2	chr11:86920351..86922677-chr11:86924131..86926585,2	K562	blood:
3	chr11:86921997..86925633-chr11:86926619..86929927,5	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10792908	0.84[ASN][1000 genomes]
rs10792909	0.84[ASN][1000 genomes]
rs10792910	0.88[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.88[TSI][hapmap];0.84[ASN][1000 genomes]
rs10792929	0.86[JPT][hapmap]
rs10898587	0.88[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs10898589	0.84[ASW][hapmap];0.88[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs10898590	0.88[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs10898593	0.88[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap]
rs10898595	0.88[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap]
rs10898603	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10898604	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10898605	0.83[ASN][1000 genomes]
rs10898606	0.83[ASN][1000 genomes]
rs10898607	0.84[ASN][1000 genomes]
rs10898608	0.84[ASN][1000 genomes]
rs10898609	0.84[ASN][1000 genomes]
rs10898610	0.88[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs10898613	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.81[YRI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10898624	0.86[JPT][hapmap]
rs11234911	0.88[CEU][hapmap];1.00[MEX][hapmap]
rs11234925	0.88[CEU][hapmap];1.00[MEX][hapmap]
rs11234930	0.88[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap]
rs11234940	0.86[JPT][hapmap]
rs11234945	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs11234958	0.88[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap]
rs11234961	0.88[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap]
rs11234962	0.84[ASW][hapmap];0.88[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs11234964	0.84[ASW][hapmap];0.88[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs11234965	0.84[ASW][hapmap];0.88[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs11234972	0.84[ASN][1000 genomes]
rs11234977	0.84[ASN][1000 genomes]
rs11234982	0.84[ASN][1000 genomes]
rs11234989	0.84[ASN][1000 genomes]
rs11234991	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11234993	0.82[ASN][1000 genomes]
rs11234996	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11235008	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11235010	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11235041	0.86[JPT][hapmap]
rs11820668	0.88[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs12223784	0.86[CEU][hapmap]
rs12224600	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1531144	0.88[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap]
rs6592334	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs7122315	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs7124448	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7127557	0.88[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap]
rs9666468	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv898059	chr11:86754948-86949369	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv1045057	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv541121	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv468777	chr11:86794856-86985581	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv555707	chr11:86794856-86985581	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv898061	chr11:86850483-86944982	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv468778	chr11:86850483-86974576	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv555708	chr11:86850483-86974576	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv898063	chr11:86864277-86944982	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv898064	chr11:86864277-87013438	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv2829956	chr11:86872504-87025059	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv898065	chr11:86891077-86984439	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv898066	chr11:86891077-86989134	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv898067	chr11:86892865-86935783	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86882000-86928000	Weak transcription	Left Ventricle	heart
2	chr11:86891800-86929400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:86906000-86931000	Weak transcription	Fetal Lung	lung
4	chr11:86910600-86924400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:86915400-86942000	Weak transcription	HepG2	liver
6	chr11:86915600-86923600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:86916000-86931000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:86919000-86926400	Weak transcription	Fetal Stomach	stomach
9	chr11:86921800-86926600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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