Variant report

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr11:71838768-71839435	U2OS	brain:	n/a	n/a
2	JUN	chr11:71839139-71839429	K562	blood:	n/a	n/a
3	KAP1	chr11:71838322-71839476	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:71823163..71824862-chr11:71837634..71839438,2	MCF-7	breast:
2	chr11:71837800..71839885-chr11:71846421..71848466,2	K562	blood:
3	chr11:71792886..71794671-chr11:71837571..71840300,2	K562	blood:
4	chr11:71831890..71834661-chr11:71839179..71841766,3	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11235411	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MKK][hapmap];0.80[EUR][1000 genomes]
rs11235445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12795135	1.00[GIH][hapmap]
rs12807065	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35422431	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11235446	ARFIP2	trans	brain	seeQTL
rs11235446	VGF	trans	brain	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71828400-71850800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:71834400-71851000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:71836000-71847000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:71836600-71839600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:71836800-71847000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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