Variant report

Variant	rs35422431
Chromosome Location	chr11:71772160-71772161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71750481..71755064-chr11:71770234..71773861,5	MCF-7	breast:
2	chr11:71771687..71773957-chr11:71779716..71782561,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137497	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11235411	0.84[EUR][1000 genomes]
rs11235445	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11235446	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12807065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71753200-71772800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:71753200-71773000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:71754200-71772800	Weak transcription	Lung	lung
4	chr11:71754200-71777400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:71754200-71777600	Weak transcription	Brain Germinal Matrix	brain
6	chr11:71754200-71777600	Weak transcription	Colonic Mucosa	Colon
7	chr11:71754200-71777800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:71754200-71780200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:71754200-71780400	Weak transcription	Aorta	Aorta
10	chr11:71754200-71789600	Weak transcription	Fetal Brain Female	brain
11	chr11:71754800-71781000	Weak transcription	Fetal Intestine Large	intestine
12	chr11:71755000-71780800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr11:71755200-71780400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:71755400-71783000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr11:71755800-71778000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:71756200-71783200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr11:71757000-71783200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:71757200-71777600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:71757400-71772800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr11:71757400-71777800	Weak transcription	Fetal Muscle Leg	muscle
21	chr11:71757800-71776800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:71760000-71772600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:71760000-71777600	Weak transcription	Colon Smooth Muscle	Colon
24	chr11:71760000-71780400	Weak transcription	Left Ventricle	heart
25	chr11:71760400-71772400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:71760400-71772600	Weak transcription	Primary B cells from cord blood	blood
27	chr11:71760400-71772800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:71760400-71772800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:71760400-71773600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:71760400-71776800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:71760400-71777400	Weak transcription	Brain Anterior Caudate	brain
32	chr11:71760400-71777400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:71760400-71777400	Weak transcription	Brain Substantia Nigra	brain
34	chr11:71760400-71777600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr11:71760400-71778200	Weak transcription	Fetal Kidney	kidney
36	chr11:71760400-71778600	Weak transcription	Fetal Lung	lung
37	chr11:71760400-71778800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr11:71760400-71780200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:71760400-71780400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:71760400-71780400	Weak transcription	Liver	Liver
41	chr11:71760400-71780400	Weak transcription	Ovary	ovary
42	chr11:71760400-71780600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr11:71760600-71772800	Weak transcription	HepG2	liver
44	chr11:71760600-71774400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:71760600-71777400	Weak transcription	Adipose Nuclei	Adipose
46	chr11:71760600-71780400	Weak transcription	Gastric	stomach
47	chr11:71760600-71780800	Weak transcription	Spleen	Spleen
48	chr11:71761000-71772200	Weak transcription	HUVEC	blood vessel
49	chr11:71761200-71772800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr11:71761400-71772200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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