Variant report

Variant	rs11235654
Chromosome Location	chr11:72805862-72805863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72802747..72806811-chr11:72852482..72855153,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137478	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10898893	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235639	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11235641	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12418930	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2003368	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4515995	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs724673	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7926133	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422418	chr11:72646518-72807865	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72746600-72824600	Weak transcription	Thymus	Thymus
2	chr11:72764200-72824600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:72773000-72810800	Weak transcription	Fetal Stomach	stomach
4	chr11:72773400-72810400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:72782600-72825200	Weak transcription	Lung	lung
6	chr11:72784400-72806400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:72784600-72806400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:72784600-72810800	Weak transcription	Aorta	Aorta
9	chr11:72784600-72812000	Weak transcription	NHEK	skin
10	chr11:72785000-72811000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:72785200-72806600	Weak transcription	Osteobl	bone
12	chr11:72785200-72810600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:72786200-72823600	Weak transcription	Placenta	Placenta
14	chr11:72788200-72825400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:72789200-72806000	Weak transcription	Adipose Nuclei	Adipose
16	chr11:72789200-72806600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:72789200-72825000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:72789200-72825200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:72789400-72806200	Weak transcription	Fetal Heart	heart
20	chr11:72789400-72806400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:72789400-72817600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:72789400-72825200	Weak transcription	HSMM	muscle
23	chr11:72789400-72825800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr11:72789600-72806000	Weak transcription	Fetal Lung	lung
25	chr11:72789600-72813400	Weak transcription	Fetal Intestine Large	intestine
26	chr11:72790000-72806400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr11:72790200-72807200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:72791400-72806000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:72793200-72810600	Weak transcription	Fetal Intestine Small	intestine
30	chr11:72793200-72824800	Weak transcription	Dnd41	blood
31	chr11:72793600-72850600	Weak transcription	NH-A	brain
32	chr11:72795000-72824800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:72795600-72813600	Weak transcription	Primary T cells from cord blood	blood
34	chr11:72795600-72836000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr11:72795800-72812000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:72796600-72806800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr11:72796800-72806200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:72798000-72806000	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:72798200-72809800	Weak transcription	Liver	Liver
40	chr11:72798200-72824600	Weak transcription	HepG2	liver
41	chr11:72799200-72806200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:72799200-72806400	Weak transcription	Brain Substantia Nigra	brain
43	chr11:72799200-72806600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr11:72799200-72807400	Weak transcription	Left Ventricle	heart
45	chr11:72799200-72810000	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:72799200-72810000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:72799200-72810000	Weak transcription	Spleen	Spleen
48	chr11:72799200-72810600	Weak transcription	Right Ventricle	heart
49	chr11:72799200-72825400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:72799400-72806600	Weak transcription	Primary monocytes fromperipheralblood	blood

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