Variant report

Variant	rs2003368
Chromosome Location	chr11:72840106-72840107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10898893	0.87[EUR][1000 genomes]
rs11235639	0.81[AFR][1000 genomes]
rs11235641	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11235654	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12418930	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs724673	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053737	chr11:72838564-72956847	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72793600-72850600	Weak transcription	NH-A	brain
2	chr11:72806800-72851000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:72807000-72847800	Weak transcription	Small Intestine	intestine
4	chr11:72811000-72851600	Weak transcription	Pancreas	Pancrea
5	chr11:72822400-72850200	Weak transcription	A549	lung
6	chr11:72823200-72848000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:72823600-72850200	Weak transcription	NHLF	lung
8	chr11:72825400-72851400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:72825600-72851600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:72826000-72851600	Weak transcription	Gastric	stomach
11	chr11:72826200-72845200	Weak transcription	Thymus	Thymus
12	chr11:72826200-72850800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:72826200-72851200	Weak transcription	Hela-S3	cervix
14	chr11:72826400-72840200	Weak transcription	Lung	lung
15	chr11:72826400-72843000	Weak transcription	Aorta	Aorta
16	chr11:72826400-72845200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:72826400-72845200	Weak transcription	Spleen	Spleen
18	chr11:72826400-72848800	Weak transcription	HSMMtube	muscle
19	chr11:72826400-72850600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:72826400-72850800	Weak transcription	Fetal Brain Male	brain
21	chr11:72826400-72851600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:72826800-72848800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:72827000-72843000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:72827000-72843000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:72828200-72850600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:72830000-72848400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr11:72832400-72851400	Weak transcription	Psoas Muscle	Psoas
28	chr11:72836200-72851400	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:72836400-72841800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr11:72836400-72843000	Weak transcription	HSMM	muscle
31	chr11:72836400-72847600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr11:72836600-72842800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr11:72836600-72843200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:72836600-72844000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:72836600-72844400	Weak transcription	Left Ventricle	heart
36	chr11:72836600-72850800	Weak transcription	K562	blood
37	chr11:72836800-72840400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:72836800-72842800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:72836800-72843000	Weak transcription	Osteobl	bone
40	chr11:72836800-72844400	Strong transcription	Primary B cells from cord blood	blood
41	chr11:72836800-72846200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:72836800-72848000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:72836800-72848600	Weak transcription	Right Ventricle	heart
44	chr11:72836800-72850600	Weak transcription	Brain Germinal Matrix	brain
45	chr11:72836800-72851400	Weak transcription	Colonic Mucosa	Colon
46	chr11:72837000-72845800	Strong transcription	Dnd41	blood
47	chr11:72837200-72841200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr11:72837200-72841600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:72837200-72851400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:72837400-72846200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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