Variant report

Variant	rs11235884
Chromosome Location	chr11:73448906-73448907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10751229	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10793066	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10898931	0.82[ASN][1000 genomes]
rs10898935	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10898936	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10898946	0.81[AMR][1000 genomes]
rs11235861	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11235862	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11235876	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11235883	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11602887	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12361691	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12420357	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12788426	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1404976	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1614987	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1632159	0.81[AMR][1000 genomes]
rs1670537	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1670540	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1670549	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1670564	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1670565	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1723833	0.81[AMR][1000 genomes]
rs1723835	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1723843	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1723848	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1792156	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1792160	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1792161	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1792166	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1792174	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1792176	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1792180	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1792183	0.81[AMR][1000 genomes]
rs1792187	0.82[AMR][1000 genomes]
rs2140893	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2367187	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2462621	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2511261	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2511270	0.80[AMR][1000 genomes]
rs2511271	0.82[ASN][1000 genomes]
rs2511272	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2512625	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2512628	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2512629	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2515093	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2886816	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4471449	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4514449	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4548647	0.81[AMR][1000 genomes]
rs4558190	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6592533	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7104603	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7119055	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7925514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933372	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7938731	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7940132	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs868667	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9705336	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv897912	chr11:73436008-73477045	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11235884	MRPL48	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73385000-73449800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:73400400-73449400	Weak transcription	Psoas Muscle	Psoas
3	chr11:73411000-73460000	Weak transcription	Colonic Mucosa	Colon
4	chr11:73413400-73470800	Weak transcription	Esophagus	oesophagus
5	chr11:73415000-73470200	Weak transcription	Aorta	Aorta
6	chr11:73417200-73469600	Weak transcription	Fetal Kidney	kidney
7	chr11:73418400-73463200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:73422400-73454000	Weak transcription	Gastric	stomach
9	chr11:73428400-73469800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:73430000-73450400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:73430000-73451600	Weak transcription	HSMMtube	muscle
12	chr11:73430000-73460800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:73430600-73456800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr11:73430600-73460800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr11:73430600-73462800	Weak transcription	HMEC	breast
16	chr11:73430600-73468800	Weak transcription	NHLF	lung
17	chr11:73430800-73470600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr11:73432000-73460600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:73432000-73460600	Weak transcription	Placenta	Placenta
20	chr11:73432000-73462200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:73432000-73465200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:73432000-73465200	Weak transcription	NHEK	skin
23	chr11:73432600-73453400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:73436600-73460600	Weak transcription	Small Intestine	intestine
25	chr11:73436800-73458600	Weak transcription	K562	blood
26	chr11:73436800-73458800	Weak transcription	A549	lung
27	chr11:73436800-73461000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:73437000-73451000	Weak transcription	Liver	Liver
29	chr11:73437000-73461000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:73437000-73469400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:73437600-73468600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr11:73441000-73458800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:73441200-73449200	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:73441200-73451400	Weak transcription	Fetal Lung	lung
35	chr11:73441200-73462800	Weak transcription	Fetal Thymus	thymus
36	chr11:73441200-73464000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:73441200-73468600	Weak transcription	Dnd41	blood
38	chr11:73441200-73470000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:73441600-73456600	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:73441800-73462600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr11:73442200-73458600	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr11:73442200-73469600	Weak transcription	HSMM	muscle
43	chr11:73442400-73461600	Weak transcription	HUVEC	blood vessel
44	chr11:73442400-73469800	Weak transcription	Primary B cells from cord blood	blood
45	chr11:73442600-73460800	Weak transcription	Pancreas	Pancrea
46	chr11:73443400-73452200	Weak transcription	Right Atrium	heart
47	chr11:73446000-73449800	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr11:73446000-73451400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr11:73446200-73450400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:73446400-73451200	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links