Variant report

Variant	rs11235887
Chromosome Location	chr11:73464573-73464574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73458899..73465006-chr11:73467540..73472378,9	K562	blood:
2	chr11:73463976..73466866-chr11:73470733..73472493,3	MCF-7	breast:
3	chr11:73459700..73464671-chr11:73465982..73472131,6	K562	blood:

Variant related genes	Relation type
ENSG00000175582	Chromatin interaction
ENSG00000256034	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1043234	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10501412	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10898943	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11235852	0.85[EUR][1000 genomes]
rs11235859	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11235860	0.85[EUR][1000 genomes]
rs11235864	0.87[EUR][1000 genomes]
rs11235875	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235881	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235882	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11235885	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11235886	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11235888	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11235898	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11235905	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11235907	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11235908	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11235910	0.91[AMR][1000 genomes]
rs11235913	0.91[AMR][1000 genomes]
rs11235914	0.91[AMR][1000 genomes]
rs11235915	0.91[AMR][1000 genomes]
rs11235920	0.83[AMR][1000 genomes]
rs11235922	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11235925	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11235927	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12365044	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12365080	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12421900	0.82[AMR][1000 genomes]
rs17132369	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1723840	0.93[ASN][1000 genomes]
rs1814547	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1830069	0.90[ASN][1000 genomes]
rs1869433	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2037710	0.84[EUR][1000 genomes]
rs2140892	0.90[ASN][1000 genomes]
rs3211165	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4537782	0.82[EUR][1000 genomes]
rs4944028	0.87[EUR][1000 genomes]
rs4944029	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4944032	0.87[EUR][1000 genomes]
rs4944033	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944034	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4944856	0.85[EUR][1000 genomes]
rs4944862	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944868	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55910552	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58862453	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60020777	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60074535	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60239378	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66556722	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs66610247	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66626689	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67167213	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67488767	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68128239	0.89[EUR][1000 genomes]
rs7115166	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7119528	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72974866	0.87[EUR][1000 genomes]
rs72974869	0.86[EUR][1000 genomes]
rs72976852	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72989228	0.91[AMR][1000 genomes]
rs7929705	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7939193	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv897912	chr11:73436008-73477045	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	esv3426251	chr11:73461503-73538032	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73413400-73470800	Weak transcription	Esophagus	oesophagus
2	chr11:73415000-73470200	Weak transcription	Aorta	Aorta
3	chr11:73417200-73469600	Weak transcription	Fetal Kidney	kidney
4	chr11:73428400-73469800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:73430600-73468800	Weak transcription	NHLF	lung
6	chr11:73430800-73470600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:73432000-73465200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:73432000-73465200	Weak transcription	NHEK	skin
9	chr11:73437000-73469400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:73437600-73468600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:73441200-73468600	Weak transcription	Dnd41	blood
12	chr11:73441200-73470000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:73442200-73469600	Weak transcription	HSMM	muscle
14	chr11:73442400-73469800	Weak transcription	Primary B cells from cord blood	blood
15	chr11:73446400-73468400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:73446400-73468600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:73446600-73468800	Weak transcription	NHDF-Ad	bronchial
18	chr11:73446800-73468400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:73448200-73468600	Weak transcription	GM12878-XiMat	blood
20	chr11:73448800-73468800	Weak transcription	Fetal Brain Female	brain
21	chr11:73449000-73464800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:73449400-73468400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:73449600-73469600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:73451400-73468800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr11:73451600-73468600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:73454800-73465400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:73455200-73465000	Weak transcription	Stomach Mucosa	stomach
28	chr11:73456400-73469000	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:73457000-73467600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr11:73459000-73469600	Weak transcription	K562	blood
31	chr11:73459400-73464800	Weak transcription	Hela-S3	cervix
32	chr11:73459400-73465200	Weak transcription	A549	lung
33	chr11:73459600-73468400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr11:73459800-73468800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:73460600-73465800	Enhancers	Placenta	Placenta
36	chr11:73460600-73466000	Genic enhancers	Fetal Intestine Small	intestine
37	chr11:73460600-73467800	Enhancers	Fetal Intestine Large	intestine
38	chr11:73461600-73464800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:73461600-73470200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:73461800-73467000	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr11:73461800-73468800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:73461800-73469600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:73461800-73469800	Weak transcription	Primary B cells from peripheral blood	blood
44	chr11:73461800-73470200	Weak transcription	Fetal Stomach	stomach
45	chr11:73462000-73468400	Weak transcription	HUVEC	blood vessel
46	chr11:73462200-73465200	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr11:73462200-73465600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:73462400-73465200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:73462600-73465000	Enhancers	Brain Anterior Caudate	brain
50	chr11:73462600-73466200	Enhancers	Liver	Liver

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