Variant report

Variant	rs10898943
Chromosome Location	chr11:73463755-73463756
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73462463..73463972-chr11:73465902..73467482,2	K562	blood:
2	chr11:73458899..73465006-chr11:73467540..73472378,9	K562	blood:
3	chr11:73458119..73460302-chr11:73461277..73464181,2	K562	blood:
4	chr11:73459700..73464671-chr11:73465982..73472131,6	K562	blood:
5	chr11:73421710..73424009-chr11:73461398..73464221,2	K562	blood:

Variant related genes	Relation type
ENSG00000175582	Chromatin interaction
ENSG00000256034	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1043234	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10501412	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10736793	0.83[ASN][1000 genomes]
rs10898947	0.87[AMR][1000 genomes]
rs10898949	0.87[AMR][1000 genomes]
rs11235844	0.82[EUR][1000 genomes]
rs11235850	0.82[EUR][1000 genomes]
rs11235851	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11235852	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235859	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11235860	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11235864	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11235875	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11235881	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11235882	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11235885	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11235886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235887	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11235888	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11235898	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235905	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235907	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235908	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235910	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235913	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235914	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235915	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11235920	0.91[AMR][1000 genomes]
rs11235922	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11235925	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11235927	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11235931	0.87[AMR][1000 genomes]
rs11235933	0.87[AMR][1000 genomes]
rs11235934	0.87[AMR][1000 genomes]
rs11235939	0.87[AMR][1000 genomes]
rs11235947	0.87[AMR][1000 genomes]
rs12365044	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365080	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12366033	0.82[EUR][1000 genomes]
rs12420099	0.87[AMR][1000 genomes]
rs12420751	0.87[AMR][1000 genomes]
rs12421077	0.87[AMR][1000 genomes]
rs12421900	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1464908	0.82[ASN][1000 genomes]
rs17132369	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17132397	0.87[AMR][1000 genomes]
rs17132403	0.87[AMR][1000 genomes]
rs17132411	0.87[AMR][1000 genomes]
rs1723840	0.97[ASN][1000 genomes]
rs1814547	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1830069	0.94[ASN][1000 genomes]
rs1869433	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2037710	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2140892	0.94[ASN][1000 genomes]
rs3211165	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3741137	0.87[AMR][1000 genomes]
rs3825003	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4537782	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4944028	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4944029	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4944032	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4944033	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944034	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4944856	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4944862	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944868	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4944869	0.87[AMR][1000 genomes]
rs55910552	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58862453	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60020777	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60074535	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60239378	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592531	0.83[ASN][1000 genomes]
rs66481935	0.82[EUR][1000 genomes]
rs66556722	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66610247	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66626689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67167213	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67488767	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68128239	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7105309	0.82[ASN][1000 genomes]
rs7115166	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7119528	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72974840	0.82[EUR][1000 genomes]
rs72974866	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72974869	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72976852	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72982926	0.87[AMR][1000 genomes]
rs72982937	0.87[AMR][1000 genomes]
rs72989228	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7929705	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7939193	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	nsv897912	chr11:73436008-73477045	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	esv3426251	chr11:73461503-73538032	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73413400-73470800	Weak transcription	Esophagus	oesophagus
2	chr11:73415000-73470200	Weak transcription	Aorta	Aorta
3	chr11:73417200-73469600	Weak transcription	Fetal Kidney	kidney
4	chr11:73428400-73469800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:73430600-73468800	Weak transcription	NHLF	lung
6	chr11:73430800-73470600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:73432000-73465200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:73432000-73465200	Weak transcription	NHEK	skin
9	chr11:73437000-73469400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:73437600-73468600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:73441200-73464000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:73441200-73468600	Weak transcription	Dnd41	blood
13	chr11:73441200-73470000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:73442200-73469600	Weak transcription	HSMM	muscle
15	chr11:73442400-73469800	Weak transcription	Primary B cells from cord blood	blood
16	chr11:73446400-73468400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:73446400-73468600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:73446600-73468800	Weak transcription	NHDF-Ad	bronchial
19	chr11:73446800-73468400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:73447000-73463800	Weak transcription	NH-A	brain
21	chr11:73448200-73468600	Weak transcription	GM12878-XiMat	blood
22	chr11:73448800-73468800	Weak transcription	Fetal Brain Female	brain
23	chr11:73449000-73464800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:73449400-73468400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:73449600-73469600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:73451400-73468800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:73451600-73468600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr11:73454800-73465400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:73455200-73465000	Weak transcription	Stomach Mucosa	stomach
30	chr11:73456400-73469000	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:73457000-73467600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:73459000-73469600	Weak transcription	K562	blood
33	chr11:73459400-73464800	Weak transcription	Hela-S3	cervix
34	chr11:73459400-73465200	Weak transcription	A549	lung
35	chr11:73459600-73468400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr11:73459800-73468800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:73460400-73464400	Enhancers	Brain Angular Gyrus	brain
38	chr11:73460600-73465800	Enhancers	Placenta	Placenta
39	chr11:73460600-73466000	Genic enhancers	Fetal Intestine Small	intestine
40	chr11:73460600-73467800	Enhancers	Fetal Intestine Large	intestine
41	chr11:73461000-73464000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:73461400-73464000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:73461400-73464000	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr11:73461400-73464000	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr11:73461400-73464400	Enhancers	Brain Cingulate Gyrus	brain
46	chr11:73461400-73464400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:73461600-73464800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr11:73461600-73470200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr11:73461800-73467000	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr11:73461800-73468800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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