Variant report

Variant	rs1464908
Chromosome Location	chr11:73402679-73402680
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1043234	0.84[ASN][1000 genomes]
rs10736793	0.92[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10898943	0.82[ASN][1000 genomes]
rs11235844	0.89[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs11235850	0.93[ASN][1000 genomes]
rs11235851	0.96[ASN][1000 genomes]
rs11235852	0.94[ASN][1000 genomes]
rs11235859	0.99[ASN][1000 genomes]
rs11235860	0.99[ASN][1000 genomes]
rs11235864	0.89[CHB][hapmap];0.87[JPT][hapmap];0.99[ASN][1000 genomes]
rs11235875	0.87[ASN][1000 genomes]
rs11235881	0.87[ASN][1000 genomes]
rs11235882	0.84[ASN][1000 genomes]
rs11235886	0.82[ASN][1000 genomes]
rs11235888	0.84[ASN][1000 genomes]
rs12365044	0.82[ASN][1000 genomes]
rs12366033	0.89[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs17132403	0.86[JPT][hapmap]
rs1723840	0.83[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1830069	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2037710	0.99[ASN][1000 genomes]
rs2140892	0.92[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3211165	0.84[ASN][1000 genomes]
rs3825003	0.89[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs4944028	0.89[CHB][hapmap];0.88[JPT][hapmap];0.99[ASN][1000 genomes]
rs4944029	0.99[ASN][1000 genomes]
rs4944032	0.89[CHB][hapmap];0.87[JPT][hapmap];0.99[ASN][1000 genomes]
rs4944033	0.84[ASN][1000 genomes]
rs4944856	0.86[CHB][hapmap];0.82[JPT][hapmap];0.99[ASN][1000 genomes]
rs4944862	0.84[ASN][1000 genomes]
rs60074535	0.84[ASN][1000 genomes]
rs60239378	0.81[ASN][1000 genomes]
rs6592531	0.92[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66481935	0.93[ASN][1000 genomes]
rs66556722	0.99[ASN][1000 genomes]
rs67167213	0.87[ASN][1000 genomes]
rs67488767	0.87[ASN][1000 genomes]
rs68128239	0.99[ASN][1000 genomes]
rs7101957	0.95[YRI][hapmap]
rs7105309	0.81[CHB][hapmap]
rs7106773	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7115166	0.87[ASN][1000 genomes]
rs7128512	0.82[CEU][hapmap]
rs72974833	0.80[ASN][1000 genomes]
rs72974840	0.93[ASN][1000 genomes]
rs72974866	0.99[ASN][1000 genomes]
rs72974869	0.93[ASN][1000 genomes]
rs72976852	0.87[ASN][1000 genomes]
rs7939193	0.89[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv390	chr11:73388188-73432899	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73374400-73427200	Weak transcription	A549	lung
2	chr11:73375200-73404400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:73375800-73416200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:73382200-73436000	Weak transcription	Small Intestine	intestine
5	chr11:73382200-73441200	Weak transcription	Stomach Mucosa	stomach
6	chr11:73382400-73421600	Weak transcription	Gastric	stomach
7	chr11:73383400-73427200	Weak transcription	Fetal Heart	heart
8	chr11:73384000-73427600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:73385000-73449800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:73385800-73411400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:73387400-73410800	Weak transcription	Colonic Mucosa	Colon
12	chr11:73389000-73445400	Weak transcription	Fetal Brain Male	brain
13	chr11:73389200-73404800	Weak transcription	K562	blood
14	chr11:73389200-73410600	Weak transcription	Brain Angular Gyrus	brain
15	chr11:73389200-73416800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:73389200-73427400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:73389200-73440200	Weak transcription	Right Ventricle	heart
18	chr11:73389400-73404800	Weak transcription	Brain Substantia Nigra	brain
19	chr11:73390800-73429600	Weak transcription	NHLF	lung
20	chr11:73391000-73433600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr11:73392200-73411400	Weak transcription	Fetal Lung	lung
22	chr11:73394400-73430200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:73395600-73416200	Weak transcription	Brain Anterior Caudate	brain
24	chr11:73395800-73412600	Weak transcription	Thymus	Thymus
25	chr11:73396000-73410200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr11:73396000-73411800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:73396000-73448000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:73396200-73404600	Weak transcription	Fetal Brain Female	brain
29	chr11:73396200-73409600	Weak transcription	NHDF-Ad	bronchial
30	chr11:73396400-73408000	Weak transcription	HSMMtube	muscle
31	chr11:73396400-73411400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:73397400-73404600	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:73397400-73404800	Weak transcription	HMEC	breast
34	chr11:73397800-73410200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr11:73397800-73426600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:73398200-73408600	Strong transcription	Fetal Stomach	stomach
37	chr11:73398400-73403200	Strong transcription	Fetal Muscle Trunk	muscle
38	chr11:73399000-73412400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:73399400-73404600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:73399600-73404800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:73399600-73412400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr11:73399800-73404600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:73399800-73404800	Weak transcription	NH-A	brain
44	chr11:73399800-73410600	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:73400000-73404800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:73400000-73416200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:73400200-73414600	Weak transcription	Ovary	ovary
48	chr11:73400400-73449400	Weak transcription	Psoas Muscle	Psoas
49	chr11:73400600-73404400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr11:73400600-73404400	Weak transcription	Pancreas	Pancrea

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