Variant report

Variant	rs11235850
Chromosome Location	chr11:73385237-73385238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1043234	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10736793	0.94[ASN][1000 genomes]
rs10898943	0.82[EUR][1000 genomes]
rs11235843	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11235844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11235851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11235852	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11235859	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11235860	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11235864	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11235875	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11235881	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11235882	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11235885	0.80[AFR][1000 genomes]
rs11235886	0.81[EUR][1000 genomes]
rs11235888	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11235898	0.84[EUR][1000 genomes]
rs11235905	0.83[EUR][1000 genomes]
rs12365044	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12366033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464908	0.93[ASN][1000 genomes]
rs1723840	0.80[ASN][1000 genomes]
rs1830069	0.83[ASN][1000 genomes]
rs2037710	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2140892	0.83[ASN][1000 genomes]
rs2272248	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3211165	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3825003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944028	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944029	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944032	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944033	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4944034	0.82[EUR][1000 genomes]
rs4944852	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4944856	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944862	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60020777	0.83[EUR][1000 genomes]
rs60074535	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60239378	0.84[EUR][1000 genomes]
rs6590	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6592531	0.94[ASN][1000 genomes]
rs66481935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66556722	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66610247	0.83[EUR][1000 genomes]
rs66626689	0.82[EUR][1000 genomes]
rs67167213	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67488767	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs68128239	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7106773	1.00[ASN][1000 genomes]
rs7115166	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72974833	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72974840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72974866	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72974869	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72976852	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7939193	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv530641	chr11:73358393-73638725	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73363800-73385400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:73372400-73388200	Weak transcription	HSMMtube	muscle
3	chr11:73372400-73395400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:73372600-73385400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:73372600-73385600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:73372600-73388200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:73372600-73388200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:73372600-73388400	Weak transcription	Dnd41	blood
9	chr11:73372600-73394800	Weak transcription	Brain Germinal Matrix	brain
10	chr11:73372800-73385400	Weak transcription	Fetal Intestine Large	intestine
11	chr11:73372800-73388400	Weak transcription	NHLF	lung
12	chr11:73372800-73390600	Weak transcription	HUVEC	blood vessel
13	chr11:73373400-73388200	Weak transcription	Fetal Thymus	thymus
14	chr11:73374200-73385400	Weak transcription	Osteobl	bone
15	chr11:73374200-73391800	Weak transcription	Hela-S3	cervix
16	chr11:73374400-73427200	Weak transcription	A549	lung
17	chr11:73374800-73388800	Weak transcription	GM12878-XiMat	blood
18	chr11:73375200-73385400	Weak transcription	Fetal Intestine Small	intestine
19	chr11:73375200-73387800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:73375200-73388400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:73375200-73388400	Weak transcription	Fetal Lung	lung
22	chr11:73375200-73388800	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:73375200-73404400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:73375400-73385600	Weak transcription	Primary T cells from cord blood	blood
25	chr11:73375400-73387600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr11:73375400-73387800	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:73375400-73387800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr11:73375400-73387800	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:73375400-73388200	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr11:73375400-73388200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:73375400-73388200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr11:73375400-73388400	Weak transcription	Brain Angular Gyrus	brain
33	chr11:73375800-73385400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr11:73375800-73386000	Weak transcription	HSMM	muscle
35	chr11:73375800-73387400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr11:73375800-73388200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr11:73375800-73388400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:73375800-73400000	Weak transcription	Lung	lung
39	chr11:73375800-73416200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr11:73376000-73388200	Weak transcription	Brain Substantia Nigra	brain
41	chr11:73376000-73388400	Weak transcription	HepG2	liver
42	chr11:73376200-73388400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr11:73376200-73390400	Weak transcription	Brain Anterior Caudate	brain
44	chr11:73376200-73395600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:73376200-73398400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr11:73376400-73388200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:73376600-73399200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:73376600-73400000	Weak transcription	Spleen	Spleen
49	chr11:73376800-73388800	Weak transcription	Fetal Kidney	kidney
50	chr11:73377000-73385400	Weak transcription	Adipose Nuclei	Adipose

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