Variant report

Variant	rs11236250
Chromosome Location	chr11:74497875-74497876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74487704..74490461-chr11:74495466..74498381,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10160417	0.92[AFR][1000 genomes]
rs11236272	1.00[YRI][hapmap]
rs11501911	1.00[AFR][1000 genomes]
rs7106897	0.92[AFR][1000 genomes]
rs7109516	0.85[AFR][1000 genomes]
rs73496942	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
7	nsv897916	chr11:74465068-74574677	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv897917	chr11:74474266-74595507	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74468000-74500800	Weak transcription	HepG2	liver
2	chr11:74470600-74500800	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:74478000-74501600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:74480200-74501400	Weak transcription	Fetal Intestine Small	intestine
5	chr11:74485200-74502600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:74488400-74503800	Weak transcription	Stomach Mucosa	stomach
7	chr11:74488800-74500000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:74489800-74500800	Weak transcription	Left Ventricle	heart
9	chr11:74490800-74498000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:74491600-74501000	Weak transcription	Fetal Brain Female	brain
11	chr11:74492000-74501800	Weak transcription	K562	blood
12	chr11:74492200-74500600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:74492200-74502400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:74492400-74500200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:74492400-74500800	Weak transcription	Placenta	Placenta
16	chr11:74492400-74501000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:74492400-74501200	Weak transcription	Fetal Lung	lung
18	chr11:74493600-74501400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:74493600-74501600	Weak transcription	Aorta	Aorta
20	chr11:74494600-74500000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:74494600-74501400	Weak transcription	HSMMtube	muscle
22	chr11:74494800-74498000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr11:74494800-74498400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:74494800-74500600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:74494800-74500800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:74494800-74500800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:74494800-74500800	Weak transcription	Brain Germinal Matrix	brain
28	chr11:74494800-74500800	Weak transcription	Fetal Stomach	stomach
29	chr11:74494800-74501400	Weak transcription	Brain Anterior Caudate	brain
30	chr11:74494800-74501400	Weak transcription	Thymus	Thymus
31	chr11:74494800-74530600	Weak transcription	NH-A	brain
32	chr11:74495000-74498600	Weak transcription	Colonic Mucosa	Colon
33	chr11:74495000-74500600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:74495000-74500800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:74495000-74500800	Weak transcription	Brain Substantia Nigra	brain
36	chr11:74495000-74500800	Weak transcription	A549	lung
37	chr11:74495000-74501000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr11:74495200-74500800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:74495400-74498400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr11:74495600-74500600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:74495600-74500800	Weak transcription	Hela-S3	cervix
42	chr11:74495600-74500800	Weak transcription	NHEK	skin
43	chr11:74495600-74501000	Weak transcription	HMEC	breast
44	chr11:74495600-74501600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr11:74495800-74498000	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr11:74495800-74500800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:74495800-74500800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:74495800-74500800	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:74495800-74500800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr11:74495800-74500800	Weak transcription	Duodenum Mucosa	Duodenum

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