Variant report

Variant	rs73496942
Chromosome Location	chr11:74662973-74662974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:74659666-74663417	GM12878	blood:	n/a	n/a
2	POLR2A	chr11:74659778-74663158	GM18505	blood:	n/a	n/a
3	POLR2A	chr11:74659565-74663285	GM12891	blood:	n/a	n/a
4	ELK1	chr11:74662962-74663053	GM12878	blood:	n/a	n/a
5	ZNF384	chr11:74662773-74663072	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:74658556..74662613-chr11:74662682..74668168,9	MCF-7	breast:
2	chr11:74654949..74658411-chr11:74658805..74662988,5	MCF-7	breast:
3	chr11:74662206..74664890-chr11:74672995..74675273,3	K562	blood:
4	chr11:74662428..74664987-chr11:74667630..74670235,3	K562	blood:
5	chr11:74661075..74664022-chr11:74709710..74711926,2	K562	blood:
6	chr11:74647283..74650920-chr11:74658326..74663032,5	K562	blood:

No data

Variant related genes	Relation type
XRRA1	TF binding region
ENSG00000265344	Chromatin interaction
ENSG00000118363	Chromatin interaction
ENSG00000166435	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11236250	0.84[AFR][1000 genomes]
rs11236272	0.92[AFR][1000 genomes]
rs11501911	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74660600-74663000	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr11:74661200-74665400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:74661200-74688600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:74661400-74663200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr11:74661400-74663800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:74661600-74686000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:74661800-74663200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:74661800-74663200	Transcr. at gene 5' and 3'	Dnd41	blood
9	chr11:74661800-74664000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:74661800-74672600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:74661800-74675000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:74661800-74699200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:74661800-74699400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:74662000-74663000	Enhancers	Fetal Brain Female	brain
15	chr11:74662000-74663000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:74662000-74663600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:74662000-74663600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:74662000-74664800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:74662000-74664800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:74662000-74665200	Weak transcription	Placenta	Placenta
21	chr11:74662000-74665200	Weak transcription	Right Atrium	heart
22	chr11:74662000-74665400	Weak transcription	Ovary	ovary
23	chr11:74662000-74669800	Weak transcription	Fetal Intestine Small	intestine
24	chr11:74662000-74677600	Weak transcription	HSMMtube	muscle
25	chr11:74662000-74680800	Weak transcription	Fetal Kidney	kidney
26	chr11:74662000-74682200	Weak transcription	Aorta	Aorta
27	chr11:74662000-74682800	Weak transcription	Colonic Mucosa	Colon
28	chr11:74662200-74663000	Weak transcription	Fetal Intestine Large	intestine
29	chr11:74662200-74663000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:74662200-74663200	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr11:74662200-74663200	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr11:74662200-74663400	Weak transcription	NHDF-Ad	bronchial
33	chr11:74662200-74663600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:74662200-74663600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:74662200-74663600	Weak transcription	NHLF	lung
36	chr11:74662200-74663800	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:74662200-74663800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:74662200-74664000	Genic enhancers	NHEK	skin
39	chr11:74662200-74664600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:74662200-74665200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr11:74662200-74665600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr11:74662200-74665800	Weak transcription	Osteobl	bone
43	chr11:74662200-74666400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
44	chr11:74662200-74666600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr11:74662200-74667000	Weak transcription	Brain Substantia Nigra	brain
46	chr11:74662200-74667000	Weak transcription	Psoas Muscle	Psoas
47	chr11:74662200-74667000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr11:74662200-74671000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:74662200-74671600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:74662200-74672800	Weak transcription	Gastric	stomach

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