Variant report

Variant	rs11236425
Chromosome Location	chr11:75133091-75133092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75118966..75120738-chr11:75128786..75133119,4	MCF-7	breast:
2	chr11:75124911..75127716-chr11:75131306..75134376,3	K562	blood:
3	chr11:75132815..75134620-chr11:75156705..75159268,2	K562	blood:
4	chr11:75113711..75115668-chr11:75131699..75133663,2	K562	blood:
5	chr11:75109263..75112751-chr11:75131805..75136633,9	MCF-7	breast:
6	chr11:75122268..75124877-chr11:75130912..75134393,4	K562	blood:
7	chr11:75132514..75134087-chr11:75134186..75136176,2	K562	blood:
8	chr11:75050045..75052977-chr11:75131615..75134854,3	MCF-7	breast:
9	chr11:75116817..75118910-chr11:75131557..75134243,2	K562	blood:
10	chr11:75130108..75133547-chr11:75244379..75247630,4	K562	blood:
11	chr11:75125667..75127320-chr11:75132876..75135732,2	K562	blood:
12	chr11:75123123..75124877-chr11:75131812..75133921,2	K562	blood:
13	chr11:75110477..75113368-chr11:75131167..75133187,3	K562	blood:
14	chr11:75130424..75133176-chr11:75273053..75274675,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000207445	Chromatin interaction
ENSG00000149257	Chromatin interaction
ENSG00000206941	Chromatin interaction
ENSG00000149273	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11236424	1.00[AMR][1000 genomes]
rs11236426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236443	1.00[AMR][1000 genomes]
rs11236446	1.00[AMR][1000 genomes]
rs12272513	1.00[AMR][1000 genomes]
rs12274327	1.00[AMR][1000 genomes]
rs12275690	1.00[AMR][1000 genomes]
rs12277069	1.00[AMR][1000 genomes]
rs12277708	1.00[AMR][1000 genomes]
rs12281974	1.00[AMR][1000 genomes]
rs12286009	1.00[AMR][1000 genomes]
rs12288089	1.00[AMR][1000 genomes]
rs12289922	1.00[AMR][1000 genomes]
rs12292511	1.00[AMR][1000 genomes]
rs12292958	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	esv1799276	chr11:75104200-75135434	Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
4	nsv897921	chr11:75115893-75147661	Bivalent Enhancer Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv897922	chr11:75116733-75147661	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
7	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75117000-75135200	Weak transcription	Right Ventricle	heart
2	chr11:75117400-75139000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:75118200-75139000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:75118200-75139600	Weak transcription	Small Intestine	intestine
5	chr11:75119400-75139800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:75120400-75134200	Weak transcription	Right Atrium	heart
7	chr11:75122800-75134800	Strong transcription	Thymus	Thymus
8	chr11:75122800-75135600	Strong transcription	Primary T cells from cord blood	blood
9	chr11:75123400-75138800	Weak transcription	Fetal Kidney	kidney
10	chr11:75123400-75140000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:75123600-75139000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:75125200-75136200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:75125400-75133600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr11:75126200-75133600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr11:75126200-75133600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:75126200-75133800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr11:75126200-75139400	Weak transcription	Esophagus	oesophagus
18	chr11:75126400-75133400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr11:75126400-75133600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:75126400-75133600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:75126400-75133800	Weak transcription	Colonic Mucosa	Colon
22	chr11:75126400-75136400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:75126400-75138000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:75126400-75139400	Weak transcription	Ovary	ovary
25	chr11:75126400-75139600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:75126400-75140600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:75126600-75138200	Weak transcription	Left Ventricle	heart
28	chr11:75126600-75139000	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:75126600-75139200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr11:75127400-75133400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:75127400-75133600	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr11:75127400-75133600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:75127600-75135600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:75127600-75137400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr11:75128000-75138800	Weak transcription	GM12878-XiMat	blood
36	chr11:75128200-75135600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:75128200-75138800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:75128400-75135200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:75129200-75136400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr11:75129400-75133200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:75129400-75141200	Weak transcription	Aorta	Aorta
42	chr11:75130200-75133200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:75130200-75133400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:75130200-75133600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:75130200-75133600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:75130200-75139000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr11:75130400-75139000	Weak transcription	HMEC	breast
48	chr11:75130600-75133800	Weak transcription	HSMM	muscle
49	chr11:75130800-75135000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:75131000-75134400	Genic enhancers	Fetal Intestine Small	intestine

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