Variant report

Variant	rs11236446
Chromosome Location	chr11:75228107-75228108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75227174..75228949-chr11:75236269..75238629,2	MCF-7	breast:
2	chr11:75117419..75119045-chr11:75226562..75228650,2	K562	blood:
3	chr11:75224068..75229006-chr11:75230364..75234823,7	K562	blood:

Variant related genes	Relation type
ENSG00000158555	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11236424	1.00[AMR][1000 genomes]
rs11236425	1.00[AMR][1000 genomes]
rs11236426	1.00[AMR][1000 genomes]
rs11236443	1.00[AMR][1000 genomes]
rs12272513	1.00[AMR][1000 genomes]
rs12274327	1.00[AMR][1000 genomes]
rs12275690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12277069	1.00[AMR][1000 genomes]
rs12277708	1.00[AMR][1000 genomes]
rs12281974	1.00[AMR][1000 genomes]
rs12286009	1.00[AMR][1000 genomes]
rs12288089	1.00[AMR][1000 genomes]
rs12289922	1.00[AMR][1000 genomes]
rs12292511	1.00[AMR][1000 genomes]
rs12292958	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75216200-75233600	Genic enhancers	Fetal Intestine Small	intestine
2	chr11:75217800-75234800	Weak transcription	Ovary	ovary
3	chr11:75219000-75231800	Weak transcription	Right Atrium	heart
4	chr11:75220400-75235200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr11:75221800-75228800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:75222000-75230000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:75222200-75229600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:75225000-75228600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:75225000-75230400	Enhancers	Primary B cells from peripheral blood	blood
10	chr11:75225400-75229200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:75225400-75229800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:75225600-75229600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr11:75225600-75231000	Weak transcription	Adipose Nuclei	Adipose
14	chr11:75225800-75228400	Weak transcription	Lung	lung
15	chr11:75225800-75228600	Weak transcription	Pancreas	Pancrea
16	chr11:75226600-75228600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:75227200-75229400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:75227200-75229400	Enhancers	K562	blood
19	chr11:75227200-75230200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:75227400-75228800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr11:75227400-75229800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:75227400-75230200	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr11:75227600-75228600	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:75227600-75230200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:75227600-75230400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr11:75227800-75228200	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr11:75227800-75228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:75227800-75228600	Weak transcription	Fetal Stomach	stomach
29	chr11:75227800-75228800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:75227800-75229000	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr11:75227800-75229000	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr11:75227800-75229000	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr11:75227800-75229200	Enhancers	Placenta	Placenta
34	chr11:75227800-75234200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:75227800-75234400	Enhancers	Fetal Intestine Large	intestine
36	chr11:75228000-75228200	Transcr. at gene 5' and 3'	Spleen	Spleen
37	chr11:75228000-75228200	Flanking Active TSS	GM12878-XiMat	blood
38	chr11:75228000-75228200	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr11:75228000-75228600	Enhancers	HepG2	liver
40	chr11:75228000-75228800	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr11:75228000-75228800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:75228000-75229000	Weak transcription	HSMMtube	muscle
43	chr11:75228000-75229200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr11:75228000-75229400	Enhancers	Duodenum Mucosa	Duodenum
45	chr11:75228000-75230000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:75228000-75230400	Enhancers	Primary hematopoietic stem cells	blood

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