Variant report

Variant	rs11236445
Chromosome Location	chr11:75221605-75221606
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr11:75221590-75221613	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:75141144..75142863-chr11:75220574..75223014,2	MCF-7	breast:
2	chr11:75220615..75223491-chr11:75231021..75233361,2	MCF-7	breast:
3	chr11:75111546..75113805-chr11:75221075..75222657,2	K562	blood:
4	chr11:75196048..75198096-chr11:75221124..75222678,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254460	TF binding region
ENSG00000149243	Chromatin interaction
ENSG00000149273	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11236447	0.97[ASN][1000 genomes]
rs11236451	0.85[CEU][hapmap];0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs61895075	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75212600-75227400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:75215600-75223600	Enhancers	Adipose Nuclei	Adipose
3	chr11:75215800-75222000	Enhancers	Fetal Intestine Large	intestine
4	chr11:75216000-75222600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr11:75216200-75233600	Genic enhancers	Fetal Intestine Small	intestine
6	chr11:75216400-75221800	Enhancers	Fetal Muscle Trunk	muscle
7	chr11:75216400-75222000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr11:75217800-75221800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:75217800-75222600	Enhancers	Placenta	Placenta
10	chr11:75217800-75234800	Weak transcription	Ovary	ovary
11	chr11:75218000-75223400	Enhancers	HepG2	liver
12	chr11:75218200-75221800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr11:75218200-75222200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr11:75218400-75221800	Weak transcription	Fetal Stomach	stomach
15	chr11:75218800-75224400	Weak transcription	Right Ventricle	heart
16	chr11:75219000-75224800	Weak transcription	Left Ventricle	heart
17	chr11:75219000-75231800	Weak transcription	Right Atrium	heart
18	chr11:75219200-75222000	Enhancers	A549	lung
19	chr11:75220200-75222600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:75220200-75225600	Weak transcription	GM12878-XiMat	blood
21	chr11:75220400-75222600	Weak transcription	Pancreas	Pancrea
22	chr11:75220400-75223000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:75220400-75224800	Weak transcription	HSMMtube	muscle
24	chr11:75220400-75226600	Weak transcription	Primary T cells from cord blood	blood
25	chr11:75220400-75227200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr11:75220400-75227400	Weak transcription	Esophagus	oesophagus
27	chr11:75220400-75228000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr11:75220400-75235200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr11:75220600-75223000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:75220600-75224400	Weak transcription	Hela-S3	cervix
31	chr11:75220600-75227200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:75220600-75227800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:75220600-75228000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:75221000-75222000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:75221200-75221800	Enhancers	K562	blood
36	chr11:75221200-75222000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:75221200-75222800	Enhancers	Spleen	Spleen
38	chr11:75221400-75221800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:75221400-75222600	Enhancers	Fetal Brain Male	brain
40	chr11:75221400-75223200	Enhancers	Fetal Brain Female	brain
41	chr11:75221400-75227400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:75221600-75221800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:75221600-75224400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:75221600-75224400	Weak transcription	Lung	lung
45	chr11:75221600-75225000	Weak transcription	Primary B cells from peripheral blood	blood
46	chr11:75221600-75225400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:75221600-75225600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr11:75221600-75226800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr11:75221600-75226800	Weak transcription	Fetal Muscle Leg	muscle

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